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traf2 c domain Return to Main Page
Instructions
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Coupling matrix for [T:0101] and [D:0167]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.1 -0.3 0 0 -0.2 0.1 0 0.1 0.1 -0.3 -0.1 1.7 -0.3 -0.1 0 -0.5 -0.1 0.1 -0.1 -0.1
F -0.1 -0.2 -0.1 -0.1 -0.1 -0.1 0 0.4 -0.1 0.5 -0.2 -0.2 -0.1 -0.1 -0.1 -0.1 -0.3 0.3 0 0
I -0.2 0.2 0.5 -0.3 -0.1 0 0 -0.2 0 0.8 0 -0.4 0.1 -0.4 0.1 -0.1 -0.6 -0.3 0.4 -0.1
L -0.3 -0.3 0.6 0.6 -0.3 -0.1 0 -0.1 0 0.2 0 -0.1 0.2 0.1 -0.2 0.1 -0.5 0.2 0 -0.1
V -0.2 -0.3 0.1 0 -0.1 0.7 0 -0.2 -0.5 0 0.3 0.4 0 0.1 -0.3 0.2 0.4 -0.3 -0.1 -0.1
M -0.2 -0.2 0.5 -0.2 -0.2 -0.1 0 -0.1 -0.2 0.3 -0.3 0.6 0 -0.1 -0.1 -0.2 -0.1 -0.1 0 -0.1
W 0.3 -0.1 -0.1 -0.1 -0.1 -0.1 0 0 -0.1 -0.2 -0.1 0.2 -0.1 -0.1 -0.1 -0.1 0.4 -0.1 0 0
Y -0.3 -0.4 -0.4 -0.2 -0.1 -0.2 0 -0.2 -0.1 -0.6 0.6 0.2 0.1 1.2 0.6 0 -0.6 -0.2 0 0.3
D 0.2 0.5 0.3 0.2 -0.2 0 0 -0.2 -0.4 -0.2 0.1 -0.4 0.2 0 -0.3 0 1.1 -0.1 -0.1 -0.1
E -0.3 -0.7 0.4 1 0.7 0 -0.1 0 -0.3 -1 0.6 -0.6 -0.1 0.1 -0.4 0.1 -0.1 1.4 -0.1 -0.2
K -0.1 0.8 0.2 0.6 0.1 -0.1 -0.1 0.2 -0.6 0.2 -0.7 -0.3 -0.6 0 -0.1 0.4 0.1 0.6 -0.2 0
R 0.3 0.9 0.6 0.7 1 -0.5 -0.1 0.5 0.6 -0.1 -0.5 -1 -0.2 -0.7 -0.3 0.4 0.4 -0.5 -0.2 0
H 0.7 -0.4 -0.3 -0.3 0.4 -0.2 0 0.6 -0.1 0.5 0.2 -0.1 -0.2 -0.3 0.1 -0.3 -0.3 0.2 -0.1 -0.1
N -0.4 1.3 0.1 -0.1 0.2 0.1 0 -0.2 -0.5 0.1 0.2 -0.3 -0.3 0.7 0.1 0.1 -0.3 -0.3 -0.1 -0.1
Q 0.5 -0.5 0.3 0 0.6 0.1 0 -0.2 0 -0.1 -0.3 -0.6 0.7 -0.4 0.4 0.6 -0.3 -0.3 -0.1 -0.1
S 0.2 0.5 -0.6 -0.8 -0.4 0.3 -0.1 0.2 0.9 0.2 -0.2 0.3 0.1 0.1 -0.1 0.1 0.2 -0.2 -0.2 -0.1
T -0.7 -0.1 -1.2 -0.4 -0.1 -0.5 -0.2 -0.3 1.1 0.9 0.7 -0.7 0.1 0.5 0.5 0.1 0.4 -0.5 0 0.2
G -0.1 0.1 -0.2 0.3 -0.5 0.1 0 -0.2 -0.5 -0.1 -0.4 1.1 0.1 -0.4 0.1 -0.1 0.8 0.1 -0.1 0.2
P 0 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 0 0 0 0 -0.1 0 0 0
C 0.7 -0.2 -0.3 -0.3 -0.3 0.5 0 -0.1 0.5 -0.5 0.6 0.2 -0.2 0.1 -0.2 -0.3 -0.1 -0.2 0 -0.1
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0101 0.1 -1 -0.1 -0.4 0.5 -0.7 -1.2 -0.4 0.5 0.9 1 0.8 -0.5 0.1 0.2 1.2 1.8 0 -1.5 -0.5
0167 0.2 0.7 0.5 0.5 0.2 -0.3 -2.1 -0.6 0.6 1.1 0.7 0.9 -0.4 0.2 -0.5 0.4 1.2 -0.3 -1.9 -1.3
Select residue pair below:
i_j Score Prob
0080_0138 3.281 1.00
0065_0068 2.552 1.00
0032_0158 2.383 1.00
0062_0164 2.271 1.00
0081_0100 2.046 1.00
0052_0059 1.876 1.00
0082_0136 1.676 1.00
0079_0162 1.665 1.00
0103_0163 1.640 1.00
0079_0102 1.636 1.00
0031_0149 1.630 1.00
0068_0078 1.602 1.00
0027_0159 1.593 1.00
0069_0136 1.588 1.00
0028_0046 1.555 1.00
0138_0142 1.533 1.00
0107_0156 1.522 1.00
0058_0089 1.492 1.00
0014_0017 1.457 1.00
0026_0049 1.447 1.00
0105_0163 1.433 1.00
0035_0149 1.391 0.99
0102_0164 1.387 0.99
0061_0084 1.381 0.99
0063_0082 1.368 0.99
0061_0082 1.354 0.99
0107_0161 1.346 0.99
0022_0053 1.346 0.99
0039_0067 1.316 0.99
0045_0063 1.307 0.99
0101_0165 1.272 0.99
0076_0141 1.269 0.99
0026_0048 1.268 0.99
0048_0051 1.263 0.99
0056_0168 1.257 0.99
0064_0077 1.254 0.99
0047_0061 1.243 0.98
0092_0095 1.232 0.98
0068_0076 1.228 0.98
0027_0105 1.222 0.98
0102_0139 1.215 0.98
0047_0063 1.211 0.98
0144_0147 1.210 0.98
0030_0033 1.201 0.98
0106_0112 1.199 0.98
0066_0098 1.195 0.98
0023_0165 1.186 0.98
0078_0138 1.174 0.98
0050_0059 1.169 0.97
0113_0143 1.155 0.97
0058_0095 1.154 0.97
0155_0158 1.142 0.97
0064_0079 1.127 0.97
0148_0155 1.124 0.97
0067_0145 1.121 0.97
0083_0094 1.117 0.96
0086_0095 1.113 0.96
0042_0131 1.113 0.96
0058_0096 1.108 0.96
0059_0084 1.102 0.96
0015_0130 1.100 0.96
0027_0161 1.098 0.96
0128_0131 1.086 0.96
0063_0134 1.082 0.96
0101_0116 1.081 0.95
0123_0137 1.072 0.95
0060_0081 1.063 0.95
0098_0126 1.062 0.95
0030_0034 1.051 0.94
0024_0051 1.036 0.94
0078_0141 1.030 0.94
0112_0115 1.024 0.93
0072_0076 1.022 0.93
0042_0055 1.021 0.93
0056_0106 1.020 0.93
0056_0066 1.014 0.93
0126_0137 1.005 0.93
0113_0116 1.004 0.93
0136_0140 1.004 0.93
0112_0116 1.000 0.92
0028_0032 0.999 0.92
0089_0092 0.997 0.92
0137_0141 0.996 0.92
0051_0068 0.993 0.92
0125_0163 0.993 0.92
0039_0044 0.981 0.91
0025_0154 0.979 0.91
0030_0158 0.977 0.91
0136_0139 0.966 0.91
0058_0094 0.965 0.90
0124_0127 0.962 0.90
0070_0140 0.962 0.90
0103_0110 0.962 0.90
0056_0060 0.958 0.90
0160_0163 0.948 0.89
0148_0160 0.947 0.89
0089_0094 0.947 0.89
0068_0075 0.946 0.89
0065_0078 0.940 0.89
0025_0163 0.937 0.89
0050_0084 0.935 0.89
0099_0107 0.935 0.89
0050_0061 0.930 0.88
0036_0087 0.929 0.88
0086_0089 0.928 0.88
0031_0064 0.927 0.88
0034_0046 0.918 0.87
0100_0117 0.915 0.87
0015_0018 0.913 0.87
0083_0096 0.912 0.87
0104_0142 0.907 0.86
0059_0096 0.905 0.86
0106_0153 0.903 0.86
0040_0071 0.899 0.86
0082_0119 0.898 0.86
0025_0161 0.897 0.86
0033_0132 0.895 0.85
0024_0048 0.893 0.85
0026_0064 0.889 0.85
0024_0049 0.889 0.85
0047_0082 0.888 0.85
0140_0144 0.888 0.85
0103_0165 0.884 0.84
0034_0104 0.883 0.84
0062_0142 0.881 0.84
0033_0165 0.881 0.84
0101_0105 0.876 0.84
0031_0155 0.874 0.84
0023_0104 0.872 0.83
0105_0111 0.868 0.83
0058_0088 0.868 0.83
0060_0098 0.864 0.83
0064_0094 0.856 0.82
0031_0035 0.854 0.82
0042_0130 0.851 0.81
0026_0031 0.850 0.81
0014_0042 0.846 0.81
0098_0164 0.845 0.81
0103_0112 0.841 0.80
0048_0057 0.841 0.80
0068_0080 0.841 0.80
0155_0160 0.839 0.80
0095_0125 0.837 0.80
0072_0100 0.835 0.80
0064_0096 0.833 0.79
0081_0098 0.833 0.79
0150_0153 0.832 0.79
0061_0085 0.832 0.79
0068_0138 0.828 0.79
0094_0107 0.826 0.79
0058_0083 0.826 0.79
0101_0167 0.823 0.78
0022_0058 0.818 0.78
0149_0152 0.817 0.77
0069_0127 0.815 0.77
0065_0120 0.813 0.77
0109_0148 0.813 0.77
0100_0138 0.809 0.77
0058_0092 0.809 0.77
0089_0095 0.806 0.76
0043_0131 0.805 0.76
0038_0041 0.804 0.76
0050_0053 0.802 0.76
0147_0151 0.801 0.76
0070_0078 0.801 0.76
0104_0114 0.800 0.75
0127_0135 0.799 0.75
0025_0146 0.798 0.75
0035_0102 0.798 0.75
0075_0145 0.798 0.75
0069_0080 0.798 0.75
0094_0157 0.797 0.75
0098_0166 0.797 0.75
0053_0056 0.796 0.75
0028_0153 0.794 0.75
0030_0057 0.789 0.74
0055_0145 0.788 0.74
0045_0065 0.787 0.74
0056_0166 0.786 0.74
0014_0018 0.785 0.73
0095_0134 0.783 0.73
0125_0137 0.783 0.73
0054_0131 0.780 0.73
0113_0152 0.778 0.72
0019_0087 0.778 0.72
0077_0145 0.776 0.72
0080_0140 0.775 0.72
0079_0084 0.775 0.72
0100_0126 0.774 0.72
0086_0094 0.773 0.72
0037_0040 0.772 0.72
0065_0117 0.771 0.71
0049_0052 0.770 0.71
0015_0055 0.769 0.71
0095_0170 0.767 0.71
0076_0083 0.766 0.71
0065_0069 0.762 0.70
0105_0161 0.759 0.70
0088_0092 0.756 0.69
0105_0112 0.753 0.69
0045_0061 0.751 0.69
0057_0092 0.751 0.69
0086_0092 0.751 0.69
0119_0135 0.749 0.68
0053_0159 0.747 0.68
0034_0145 0.747 0.68
0034_0165 0.745 0.68
0043_0081 0.745 0.68
0049_0092 0.745 0.68
0015_0042 0.744 0.68
0104_0143 0.743 0.67
0106_0156 0.743 0.67
0111_0114 0.742 0.67
0028_0034 0.739 0.67
0015_0043 0.739 0.67
0014_0043 0.738 0.67
0082_0125 0.738 0.67
0014_0130 0.735 0.66
0083_0090 0.733 0.66
0162_0168 0.732 0.66
0015_0054 0.730 0.65
0051_0056 0.729 0.65
0058_0086 0.728 0.65
0052_0095 0.727 0.65
0019_0158 0.727 0.65
0143_0148 0.724 0.64
0047_0080 0.723 0.64
0028_0162 0.722 0.64
0115_0135 0.721 0.64
0069_0137 0.719 0.64
0025_0028 0.718 0.64
0086_0162 0.717 0.63
0052_0089 0.717 0.63
0125_0135 0.717 0.63
0055_0130 0.717 0.63
Local Interactions:
i_j Score Prob
0106_0107 2.546 1.00
0075_0076 2.368 1.00
0066_0068 2.299 1.00
0137_0138 2.117 1.00
0015_0016 2.077 1.00
0065_0066 1.928 1.00
0078_0080 1.730 1.00
0094_0095 1.724 1.00
0156_0157 1.709 1.00
0057_0058 1.705 1.00
0014_0015 1.701 1.00
0014_0016 1.683 1.00
0109_0110 1.677 1.00
0039_0040 1.628 1.00
0130_0131 1.594 1.00
0144_0146 1.573 1.00
0112_0113 1.552 1.00
0027_0029 1.537 1.00
0022_0024 1.449 1.00
0070_0072 1.418 1.00
0144_0145 1.408 1.00
0015_0017 1.396 0.99
0112_0114 1.352 0.99
0042_0043 1.340 0.99
0067_0068 1.339 0.99
0120_0121 1.336 0.99
0016_0017 1.323 0.99
0128_0129 1.311 0.99
0090_0091 1.311 0.99
0125_0126 1.304 0.99
0037_0038 1.303 0.99
0074_0075 1.291 0.99
0105_0106 1.289 0.99
0065_0067 1.268 0.99
0113_0114 1.257 0.99
0106_0108 1.251 0.99
0158_0160 1.245 0.98
0061_0063 1.230 0.98
0159_0160 1.229 0.98
0026_0028 1.217 0.98
0069_0070 1.200 0.98
0116_0117 1.184 0.98
0028_0029 1.172 0.98
0094_0096 1.166 0.97
0134_0136 1.155 0.97
0083_0084 1.150 0.97
0109_0111 1.129 0.97
0098_0100 1.119 0.96
0124_0126 1.119 0.96
0024_0026 1.116 0.96
0018_0019 1.114 0.96
0021_0022 1.107 0.96
0038_0039 1.104 0.96
0113_0115 1.101 0.96
0157_0159 1.098 0.96
0030_0031 1.092 0.96
0029_0030 1.088 0.96
0118_0119 1.084 0.96
0164_0165 1.075 0.95
0114_0115 1.054 0.95
0153_0155 1.050 0.94
0158_0159 1.041 0.94
0085_0086 1.038 0.94
0103_0105 1.036 0.94
0089_0090 1.033 0.94
0111_0112 1.033 0.94
0084_0086 1.030 0.94
0096_0098 1.028 0.94
0025_0027 1.015 0.93
0020_0022 0.997 0.92
0054_0055 0.988 0.92
0072_0073 0.986 0.92
0091_0092 0.983 0.91
0034_0035 0.970 0.91
0055_0056 0.957 0.90
0095_0096 0.949 0.89
0115_0117 0.932 0.88
0036_0037 0.929 0.88
0163_0165 0.922 0.88
0049_0050 0.908 0.87
0064_0066 0.902 0.86
0044_0045 0.901 0.86
0088_0089 0.900 0.86
0111_0113 0.898 0.86
0108_0109 0.893 0.85
0151_0152 0.889 0.85
0160_0162 0.887 0.85
0104_0105 0.881 0.84
0123_0125 0.880 0.84
0160_0161 0.854 0.82
0020_0021 0.854 0.82
0039_0041 0.843 0.80
0091_0093 0.834 0.79
0073_0074 0.829 0.79
0123_0124 0.827 0.79
0152_0153 0.824 0.78
0017_0018 0.819 0.78
0072_0074 0.816 0.77
0166_0168 0.814 0.77
0051_0053 0.806 0.76
0016_0018 0.800 0.75
0133_0134 0.795 0.75
0131_0132 0.780 0.73
0126_0127 0.778 0.72
0163_0164 0.776 0.72
0146_0147 0.772 0.72
0041_0042 0.765 0.71
0136_0137 0.763 0.70
0136_0138 0.760 0.70
0090_0092 0.756 0.69
0041_0043 0.752 0.69
0017_0019 0.750 0.68
0154_0155 0.749 0.68
0087_0088 0.748 0.68
0052_0053 0.748 0.68
0092_0094 0.746 0.68
0099_0101 0.744 0.68
0108_0110 0.730 0.65
0164_0166 0.723 0.64
0134_0135 0.722 0.64
0054_0056 0.721 0.64
0128_0130 0.721 0.64
0110_0112 0.717 0.63
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D L A M ...
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