May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

HIV Vif Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [H:0042] and [Q:0083]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0 0 0 0 0 0 0.2 0 0 0 0 0 0 0 0 0 0 0 0
F 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
I 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
L 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
V 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
M 0 0 0 0 0 -0.1 -0.1 0.4 0 -0.1 0 0 -0.1 0 -0.1 0 0 0 0 0.4
W 0 0 0 0 0 0 0 -0.1 0 0 0 0 -0.1 0 -0.1 0 0 0.4 0 0
Y 0 0 0 0 0 0 0.6 -0.1 0 0 0 0 -0.1 0 -0.1 0 0 0 0 0
D 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
E 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
K 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
R 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
H -0.1 -0.1 -0.1 0.1 -0.2 0.5 0.2 -0.4 0.1 0.1 -0.1 -0.1 0.7 0.1 1.1 0.1 0.1 -0.2 -0.1 -0.2
N 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Q 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
S 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
T 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
G 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
P 0 0 0 0 0.3 -0.1 -0.1 0.8 0 -0.1 0 0 0.1 0 -0.1 0 0 0 0 -0.1
C 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0042 0 -0.2 -0.2 -0.2 -0.2 0.4 0.1 0.2 -0.2 -0.2 -0.2 -0.2 2.2 -0.2 -0.2 -0.2 -0.2 -0.2 0.6 -0.2
0083 -0.3 -0.3 -0.3 -0.1 0 0.3 0.4 0.4 0 -0.1 -0.3 -0.3 0.3 0 0.8 0 0 0 -0.3 0
Select residue pair below:
i_j Score Prob
0064_0098 3.371 1.00
0013_0018 2.035 1.00
0120_0127 1.978 1.00
0023_0026 1.877 1.00
0139_0142 1.564 1.00
0041_0124 1.559 1.00
0119_0122 1.534 1.00
0113_0122 1.531 1.00
0121_0125 1.523 1.00
0069_0118 1.516 1.00
0106_0144 1.497 1.00
0014_0125 1.452 1.00
0127_0130 1.447 1.00
0038_0057 1.405 0.99
0064_0089 1.402 0.99
0027_0031 1.394 0.99
0064_0116 1.391 0.99
0124_0128 1.378 0.99
0066_0141 1.370 0.99
0066_0151 1.360 0.99
0117_0120 1.342 0.99
0124_0130 1.304 0.99
0032_0120 1.303 0.99
0021_0070 1.294 0.99
0081_0084 1.270 0.99
0050_0071 1.261 0.99
0102_0105 1.256 0.99
0117_0141 1.244 0.98
0035_0068 1.244 0.98
0053_0135 1.235 0.98
0160_0169 1.233 0.98
0099_0102 1.230 0.98
0120_0168 1.223 0.98
0050_0078 1.222 0.98
0040_0142 1.214 0.98
0063_0125 1.202 0.98
0034_0088 1.186 0.98
0028_0090 1.170 0.97
0102_0147 1.167 0.97
0141_0144 1.156 0.97
0015_0125 1.148 0.97
0091_0098 1.148 0.97
0130_0152 1.139 0.97
0059_0064 1.137 0.97
0105_0150 1.127 0.97
0050_0067 1.125 0.97
0120_0125 1.125 0.97
0122_0130 1.122 0.97
0163_0173 1.116 0.96
0064_0105 1.107 0.96
0141_0149 1.107 0.96
0059_0079 1.102 0.96
0079_0087 1.102 0.96
0057_0099 1.099 0.96
0059_0141 1.094 0.96
0040_0149 1.093 0.96
0096_0103 1.086 0.96
0098_0134 1.086 0.96
0056_0106 1.081 0.95
0060_0137 1.070 0.95
0035_0129 1.064 0.95
0170_0173 1.062 0.95
0038_0138 1.062 0.95
0023_0030 1.051 0.94
0020_0078 1.049 0.94
0098_0122 1.047 0.94
0122_0153 1.046 0.94
0066_0130 1.045 0.94
0127_0150 1.045 0.94
0015_0028 1.041 0.94
0165_0169 1.031 0.94
0048_0173 1.026 0.94
0146_0150 1.021 0.93
0165_0171 1.020 0.93
0029_0113 1.018 0.93
0163_0166 1.017 0.93
0059_0135 1.012 0.93
0117_0124 1.009 0.93
0117_0136 1.005 0.93
0142_0153 1.001 0.92
0164_0173 1.000 0.92
0043_0149 0.999 0.92
0059_0167 0.997 0.92
0027_0064 0.995 0.92
0072_0087 0.991 0.92
0101_0130 0.987 0.92
0162_0172 0.986 0.92
0069_0086 0.985 0.92
0122_0126 0.983 0.91
0026_0030 0.979 0.91
0129_0132 0.972 0.91
0120_0141 0.965 0.90
0072_0104 0.965 0.90
0014_0124 0.964 0.90
0051_0078 0.964 0.90
0066_0163 0.963 0.90
0043_0100 0.957 0.90
0062_0110 0.956 0.90
0143_0149 0.956 0.90
0065_0125 0.955 0.90
0120_0152 0.954 0.90
0094_0120 0.950 0.90
0101_0116 0.942 0.89
0067_0149 0.940 0.89
0097_0106 0.940 0.89
0068_0118 0.938 0.89
0051_0150 0.938 0.89
0048_0169 0.936 0.89
0066_0091 0.935 0.89
0073_0155 0.934 0.88
0080_0083 0.933 0.88
0051_0054 0.932 0.88
0098_0136 0.930 0.88
0161_0171 0.930 0.88
0072_0103 0.929 0.88
0025_0076 0.927 0.88
0022_0083 0.927 0.88
0169_0172 0.927 0.88
0050_0087 0.925 0.88
0052_0118 0.925 0.88
0020_0144 0.924 0.88
0038_0106 0.922 0.88
0116_0147 0.922 0.88
0097_0118 0.920 0.87
0013_0120 0.919 0.87
0054_0080 0.919 0.87
0042_0045 0.916 0.87
0116_0128 0.915 0.87
0046_0122 0.912 0.87
0014_0160 0.911 0.87
0072_0075 0.911 0.87
0060_0087 0.911 0.87
0115_0143 0.911 0.87
0071_0078 0.907 0.86
0066_0144 0.906 0.86
0068_0106 0.905 0.86
0026_0035 0.903 0.86
0078_0147 0.901 0.86
0102_0124 0.900 0.86
0065_0090 0.896 0.86
0032_0117 0.895 0.85
0020_0050 0.892 0.85
0059_0155 0.891 0.85
0119_0138 0.890 0.85
0116_0150 0.888 0.85
0074_0152 0.888 0.85
0013_0021 0.887 0.85
0102_0141 0.885 0.85
0086_0097 0.880 0.84
0049_0173 0.879 0.84
0018_0074 0.877 0.84
0019_0044 0.876 0.84
0017_0129 0.872 0.83
0074_0150 0.870 0.83
0131_0144 0.869 0.83
0013_0077 0.867 0.83
0036_0099 0.861 0.82
0044_0049 0.861 0.82
0113_0153 0.859 0.82
0040_0115 0.859 0.82
0062_0098 0.858 0.82
0118_0121 0.858 0.82
0162_0166 0.858 0.82
0113_0127 0.857 0.82
0102_0152 0.857 0.82
0151_0155 0.856 0.82
0102_0153 0.855 0.82
0169_0173 0.854 0.82
0070_0118 0.853 0.81
0099_0125 0.852 0.81
0043_0115 0.852 0.81
0120_0131 0.848 0.81
0022_0030 0.847 0.81
0166_0170 0.845 0.81
0057_0164 0.844 0.81
0163_0172 0.844 0.81
0124_0152 0.842 0.80
0062_0091 0.839 0.80
0088_0094 0.839 0.80
0162_0165 0.838 0.80
0025_0038 0.838 0.80
0056_0085 0.836 0.80
0082_0172 0.835 0.80
0014_0056 0.835 0.80
0161_0166 0.834 0.79
0116_0146 0.833 0.79
0067_0143 0.833 0.79
0166_0173 0.833 0.79
0102_0128 0.832 0.79
0054_0079 0.831 0.79
0165_0170 0.831 0.79
0063_0138 0.829 0.79
0042_0073 0.828 0.79
0102_0116 0.826 0.79
0166_0169 0.825 0.78
0013_0029 0.823 0.78
0028_0119 0.822 0.78
0076_0119 0.822 0.78
0035_0113 0.822 0.78
0077_0137 0.820 0.78
0064_0153 0.818 0.78
0014_0143 0.818 0.78
0125_0173 0.817 0.77
0033_0147 0.815 0.77
0161_0172 0.815 0.77
0118_0137 0.814 0.77
0122_0127 0.813 0.77
0086_0118 0.813 0.77
0064_0149 0.809 0.77
0086_0092 0.807 0.76
0044_0071 0.807 0.76
0083_0091 0.806 0.76
0162_0173 0.806 0.76
0044_0052 0.805 0.76
0066_0099 0.805 0.76
0068_0097 0.803 0.76
0028_0065 0.803 0.76
0026_0033 0.802 0.76
0165_0172 0.801 0.76
0123_0126 0.798 0.75
0060_0068 0.798 0.75
0097_0172 0.797 0.75
0082_0125 0.796 0.75
0028_0067 0.795 0.75
0042_0048 0.794 0.75
0070_0077 0.794 0.75
0049_0071 0.792 0.74
0152_0155 0.792 0.74
0060_0077 0.792 0.74
0116_0130 0.792 0.74
0020_0071 0.790 0.74
0102_0118 0.790 0.74
0113_0130 0.789 0.74
0042_0083 0.789 0.74
0033_0072 0.788 0.74
0064_0069 0.788 0.74
0019_0048 0.787 0.74
0113_0154 0.784 0.73
0018_0120 0.783 0.73
Local Interactions:
i_j Score Prob
0171_0173 1.918 1.00
0172_0173 1.719 1.00
0170_0172 1.711 1.00
0155_0156 1.598 1.00
0171_0172 1.530 1.00
0060_0061 1.406 0.99
0048_0049 1.373 0.99
0127_0128 1.309 0.99
0101_0102 1.308 0.99
0059_0060 1.289 0.99
0054_0056 1.284 0.99
0059_0061 1.234 0.98
0063_0065 1.228 0.98
0165_0166 1.193 0.98
0161_0162 1.182 0.98
0073_0074 1.179 0.98
0046_0048 1.179 0.98
0047_0049 1.167 0.97
0116_0117 1.141 0.97
0023_0024 1.141 0.97
0170_0171 1.129 0.97
0047_0048 1.114 0.96
0030_0031 1.097 0.96
0109_0110 1.084 0.96
0014_0015 1.063 0.95
0162_0163 1.061 0.95
0014_0016 1.007 0.93
0083_0084 0.977 0.91
0162_0164 0.973 0.91
0050_0052 0.970 0.91
0169_0170 0.963 0.90
0166_0168 0.958 0.90
0166_0167 0.937 0.89
0167_0168 0.936 0.89
0100_0102 0.934 0.88
0169_0171 0.932 0.88
0086_0088 0.911 0.87
0128_0129 0.906 0.86
0049_0050 0.861 0.82
0046_0047 0.851 0.81
0074_0075 0.843 0.80
0072_0074 0.840 0.80
0142_0143 0.835 0.80
0128_0130 0.821 0.78
0126_0127 0.817 0.77
0168_0169 0.801 0.76
0021_0023 0.789 0.74
0152_0154 0.788 0.74
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M E N R W ...

Page generated in 0.0229 seconds.