May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

rhodopsin Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [V:0053] and [L:0126]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.4 1.3 -0.1 0 -0.1 -0.1 1.6 0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.4 -0.2 -0.2
F -0.1 -0.3 0 0.2 0 0 -0.5 -0.2 0 0 0 0 0 0 0 0 0 0.4 0 0.5
I -0.1 -0.4 0 0.1 0 0 -0.1 -0.2 0 0 0 0 0 0 0 0 0 -0.1 1.3 0
L 0.2 0.7 0 0.1 0.3 -0.1 0 0.1 0 0 0 0 0 -0.1 0 -0.1 -0.2 0.1 -0.1 -0.1
V -0.1 -0.4 0 0.8 -0.1 0.5 -0.1 -0.2 0 0 0 0 0 -0.1 0 0 -0.1 0.3 0 0
M 0 -0.1 0 0.4 0 0 -0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
W 0 -0.1 0 -0.1 0 0 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
Y 0.6 -0.6 -0.1 -0.1 -0.1 -0.1 -0.3 -0.5 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.2 0.8 -0.1 -0.1
D 0 0.4 0 -0.1 0 0 -0.2 -0.1 0 0 0 0 0 0 0 0 0 -0.1 0 0
E 0 -0.1 0 -0.1 0 0 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
K 0 -0.1 0 -0.1 0 0 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
R -0.1 0 0 -0.3 0 0 1.4 0.1 0 0 0 0 0 -0.1 0 -0.1 -0.1 -0.2 0 0
H 0 -0.2 0 -0.1 0 0 -0.3 -0.1 0 0 0 0 0 0.5 0 0.5 0 -0.1 0 0
N -0.1 -0.2 0 -0.1 0 0 -0.5 -0.2 0 0 0 0 0 0 0 0 0.5 0.4 0 0
Q 0 0.1 0 -0.1 0 0 0.4 -0.1 0 0 0 0 0 0 0 0 0 -0.1 0 0
S -0.1 0.4 0 -0.6 -0.1 -0.1 0.9 1.4 0 0 0 0 0 -0.1 0 -0.1 -0.1 -0.2 -0.2 -0.1
T -0.1 -0.1 -0.1 0.2 -0.1 -0.1 -0.6 1.9 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.2 -0.5 -0.1
G -0.1 -0.1 0 0.8 0 -0.1 0.2 -0.3 0 0 0 0 0 0 0 0 0.4 -0.2 -0.1 0
P 0 -0.1 0 -0.1 0 0 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
C -0.1 0.1 0 0.3 0 0 0 -0.4 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0053 1.2 0.1 0.2 0.5 0.3 -0.4 -0.6 0.3 -0.5 -0.6 -0.6 0.1 -0.2 0.1 -0.2 0.8 0.1 0.2 -0.6 0
0126 0.2 1.7 -0.8 1.5 -0.5 -0.5 2.2 1.4 -0.8 -0.8 -0.8 -0.8 -0.8 -0.4 -0.8 -0.4 -0.3 0.5 -0.1 -0.5
Select residue pair below:
i_j Score Prob
0046_0078 4.429 1.00
0014_0202 2.483 1.00
0075_0205 2.354 1.00
0080_0105 2.177 0.99
0009_0055 2.068 0.99
0079_0082 1.916 0.98
0022_0209 1.911 0.98
0053_0126 1.768 0.96
0060_0069 1.725 0.96
0079_0205 1.646 0.94
0075_0079 1.633 0.94
0178_0184 1.620 0.93
0047_0075 1.591 0.93
0047_0083 1.564 0.92
0019_0044 1.561 0.92
0050_0054 1.561 0.92
0107_0133 1.497 0.89
0108_0112 1.471 0.88
0080_0108 1.428 0.86
0183_0193 1.423 0.86
0105_0108 1.421 0.86
0112_0205 1.406 0.85
0040_0086 1.351 0.82
0016_0048 1.337 0.81
0076_0174 1.332 0.80
0178_0200 1.326 0.80
0070_0074 1.326 0.80
0018_0206 1.320 0.80
0047_0205 1.313 0.79
0076_0112 1.300 0.78
0050_0116 1.297 0.78
0188_0195 1.297 0.78
0079_0112 1.288 0.77
0178_0193 1.285 0.77
0111_0204 1.285 0.77
0153_0157 1.279 0.77
0076_0081 1.278 0.76
0017_0202 1.277 0.76
0077_0106 1.276 0.76
0008_0135 1.270 0.76
0109_0205 1.265 0.75
0040_0209 1.247 0.74
0023_0041 1.241 0.73
0018_0210 1.230 0.73
0011_0206 1.224 0.72
0080_0205 1.224 0.72
0011_0106 1.223 0.72
0051_0082 1.220 0.72
0073_0081 1.211 0.71
0067_0190 1.204 0.70
0115_0178 1.202 0.70
0061_0117 1.202 0.70
0180_0188 1.200 0.70
0073_0076 1.198 0.70
0020_0023 1.198 0.70
0171_0205 1.195 0.69
0073_0208 1.192 0.69
0011_0015 1.191 0.69
0020_0045 1.184 0.68
0085_0102 1.184 0.68
0158_0162 1.169 0.67
0043_0082 1.158 0.66
0105_0109 1.153 0.65
0142_0168 1.151 0.65
0031_0168 1.144 0.64
0128_0191 1.144 0.64
0016_0045 1.139 0.64
0012_0052 1.138 0.64
0043_0050 1.137 0.64
0080_0112 1.131 0.63
0039_0082 1.124 0.62
0052_0125 1.124 0.62
0040_0137 1.122 0.62
0047_0082 1.122 0.62
0075_0082 1.121 0.62
0142_0199 1.118 0.62
0111_0130 1.118 0.62
0125_0185 1.116 0.62
0060_0063 1.115 0.62
0082_0175 1.113 0.61
0121_0128 1.111 0.61
0054_0072 1.110 0.61
0047_0108 1.099 0.60
0009_0012 1.098 0.60
0117_0183 1.094 0.59
0113_0117 1.093 0.59
0087_0146 1.072 0.57
0075_0080 1.071 0.57
0135_0165 1.069 0.57
0079_0204 1.068 0.57
0107_0127 1.066 0.56
0019_0045 1.060 0.56
0028_0147 1.059 0.56
0102_0173 1.058 0.56
0080_0200 1.058 0.56
0047_0080 1.055 0.55
0043_0079 1.055 0.55
0011_0202 1.052 0.55
0043_0163 1.045 0.54
0117_0132 1.043 0.54
0047_0079 1.038 0.53
0044_0209 1.031 0.53
0043_0208 1.031 0.53
0116_0178 1.027 0.52
0058_0122 1.023 0.52
0048_0052 1.023 0.52
0122_0186 1.021 0.52
0084_0128 1.021 0.52
0064_0169 1.006 0.50
0037_0094 1.000 0.49
0080_0170 0.996 0.49
0112_0208 0.994 0.49
0045_0049 0.992 0.48
0185_0188 0.990 0.48
0060_0067 0.989 0.48
0079_0105 0.985 0.48
0022_0044 0.983 0.47
0027_0030 0.982 0.47
0047_0141 0.980 0.47
0031_0132 0.970 0.46
0169_0184 0.968 0.46
0020_0118 0.967 0.46
0049_0160 0.963 0.45
0136_0140 0.962 0.45
0205_0209 0.959 0.45
0023_0136 0.959 0.45
0022_0040 0.959 0.45
0074_0142 0.956 0.44
0080_0171 0.951 0.44
0129_0180 0.950 0.44
0125_0192 0.949 0.44
0039_0075 0.949 0.44
0078_0215 0.948 0.44
0114_0176 0.946 0.43
0061_0128 0.946 0.43
0015_0108 0.945 0.43
0094_0195 0.943 0.43
0191_0212 0.942 0.43
0139_0143 0.940 0.43
0094_0188 0.940 0.43
0138_0142 0.939 0.43
0053_0065 0.938 0.43
0014_0206 0.938 0.43
0051_0054 0.938 0.43
0188_0192 0.936 0.42
0082_0115 0.930 0.42
0073_0105 0.926 0.41
0040_0156 0.926 0.41
0023_0031 0.925 0.41
0011_0207 0.925 0.41
0024_0142 0.920 0.41
0015_0112 0.919 0.41
0059_0062 0.913 0.40
0047_0054 0.910 0.40
0124_0179 0.908 0.39
0016_0210 0.906 0.39
0128_0195 0.905 0.39
0049_0195 0.905 0.39
0053_0198 0.904 0.39
0083_0205 0.904 0.39
0141_0168 0.903 0.39
0211_0214 0.902 0.39
0011_0030 0.902 0.39
0042_0132 0.902 0.39
0087_0163 0.900 0.39
0165_0169 0.897 0.38
0111_0129 0.897 0.38
0153_0202 0.895 0.38
0013_0049 0.894 0.38
0179_0185 0.894 0.38
0043_0046 0.892 0.38
0006_0126 0.890 0.38
0130_0133 0.889 0.37
0180_0196 0.889 0.37
0112_0175 0.888 0.37
0011_0048 0.887 0.37
0075_0204 0.886 0.37
0025_0028 0.885 0.37
0079_0086 0.879 0.36
0116_0170 0.878 0.36
0074_0179 0.878 0.36
0086_0212 0.877 0.36
0092_0124 0.877 0.36
0109_0112 0.876 0.36
0015_0047 0.876 0.36
0038_0042 0.876 0.36
0084_0105 0.875 0.36
0088_0135 0.874 0.36
0020_0093 0.874 0.36
0178_0194 0.872 0.36
0147_0155 0.870 0.36
0076_0109 0.868 0.35
0099_0139 0.866 0.35
0035_0213 0.865 0.35
0080_0109 0.864 0.35
0174_0197 0.863 0.35
0182_0197 0.863 0.35
0047_0171 0.862 0.35
0072_0112 0.861 0.35
0107_0129 0.860 0.35
0016_0202 0.860 0.35
0083_0131 0.856 0.34
0155_0176 0.852 0.34
0205_0208 0.851 0.34
0191_0199 0.851 0.34
0020_0092 0.851 0.34
0135_0176 0.849 0.33
0056_0183 0.847 0.33
0007_0198 0.846 0.33
0135_0214 0.846 0.33
0008_0194 0.845 0.33
0068_0137 0.845 0.33
0122_0185 0.841 0.33
0114_0118 0.841 0.33
0127_0178 0.840 0.33
0070_0193 0.840 0.33
0059_0066 0.839 0.33
0016_0158 0.839 0.33
0141_0166 0.838 0.32
0130_0182 0.838 0.32
0083_0086 0.838 0.32
0031_0156 0.838 0.32
0118_0122 0.837 0.32
0142_0167 0.837 0.32
0079_0108 0.836 0.32
0115_0136 0.835 0.32
0079_0208 0.834 0.32
0102_0202 0.834 0.32
0018_0214 0.833 0.32
0012_0048 0.829 0.32
0108_0171 0.829 0.32
0047_0204 0.829 0.32
0079_0175 0.827 0.31
0134_0138 0.827 0.31
0082_0112 0.826 0.31
0076_0201 0.826 0.31
0123_0184 0.826 0.31
0107_0151 0.825 0.31
0156_0163 0.825 0.31
0115_0148 0.823 0.31
0087_0166 0.823 0.31
0018_0189 0.820 0.31
0164_0207 0.819 0.31
0017_0024 0.819 0.31
0048_0098 0.817 0.30
0089_0213 0.814 0.30
0108_0175 0.814 0.30
0067_0181 0.813 0.30
0124_0190 0.813 0.30
0071_0078 0.813 0.30
0015_0205 0.813 0.30
0017_0084 0.813 0.30
0053_0070 0.812 0.30
0014_0018 0.812 0.30
0131_0137 0.810 0.30
0095_0103 0.810 0.30
0060_0180 0.809 0.30
0075_0083 0.809 0.30
0037_0213 0.808 0.30
0043_0205 0.806 0.29
0019_0131 0.806 0.29
0121_0148 0.804 0.29
0082_0086 0.804 0.29
0058_0118 0.804 0.29
0132_0160 0.802 0.29
0080_0212 0.802 0.29
0081_0174 0.801 0.29
0056_0067 0.801 0.29
0209_0216 0.800 0.29
0127_0131 0.800 0.29
0023_0074 0.799 0.29
0024_0105 0.796 0.29
0093_0097 0.794 0.28
0092_0164 0.794 0.28
0135_0172 0.794 0.28
0019_0048 0.793 0.28
0153_0199 0.793 0.28
0134_0168 0.792 0.28
0088_0094 0.792 0.28
0123_0128 0.792 0.28
0127_0196 0.790 0.28
0160_0166 0.789 0.28
0075_0086 0.787 0.28
0186_0196 0.786 0.28
0072_0108 0.786 0.28
0047_0086 0.785 0.28
0119_0191 0.784 0.28
0130_0134 0.784 0.28
0024_0128 0.784 0.28
0113_0183 0.784 0.28
0066_0124 0.784 0.28
0120_0129 0.783 0.27
0149_0152 0.782 0.27
0007_0067 0.780 0.27
0166_0170 0.780 0.27
0037_0116 0.779 0.27
0052_0107 0.778 0.27
0057_0194 0.778 0.27
0168_0212 0.777 0.27
0011_0014 0.776 0.27
0058_0068 0.775 0.27
0046_0101 0.774 0.27
0176_0208 0.774 0.27
0127_0185 0.772 0.26
0012_0091 0.771 0.26
0044_0206 0.771 0.26
0124_0198 0.770 0.26
0008_0012 0.770 0.26
0055_0200 0.767 0.26
0010_0015 0.767 0.26
0083_0208 0.766 0.26
0096_0143 0.765 0.26
0158_0169 0.763 0.26
0043_0137 0.763 0.26
0005_0013 0.761 0.26
0114_0127 0.761 0.26
0020_0036 0.761 0.26
0116_0200 0.760 0.25
0185_0192 0.760 0.25
0081_0130 0.759 0.25
0076_0197 0.759 0.25
0049_0121 0.758 0.25
0108_0204 0.757 0.25
0014_0027 0.756 0.25
0108_0111 0.756 0.25
0092_0145 0.755 0.25
0088_0092 0.755 0.25
0082_0101 0.755 0.25
Local Interactions:
i_j Score Prob
0066_0067 1.355 0.82
0030_0031 1.302 0.78
0182_0183 1.269 0.76
0108_0109 1.187 0.69
0183_0184 1.175 0.67
0217_0218 1.138 0.64
0027_0029 1.133 0.63
0221_0222 1.129 0.63
0025_0026 1.125 0.63
0204_0205 1.083 0.58
0028_0030 1.037 0.53
0027_0028 1.015 0.51
0141_0142 1.010 0.50
0009_0010 0.981 0.47
0009_0011 0.968 0.46
0028_0029 0.961 0.45
0026_0027 0.941 0.43
0167_0168 0.939 0.43
0124_0125 0.937 0.42
0010_0011 0.935 0.42
0220_0221 0.932 0.42
0174_0175 0.929 0.42
0005_0006 0.929 0.42
0067_0068 0.917 0.40
0091_0092 0.917 0.40
0083_0084 0.914 0.40
0206_0207 0.896 0.38
0215_0216 0.882 0.37
0023_0024 0.868 0.35
0164_0166 0.861 0.35
0073_0075 0.848 0.33
0153_0154 0.844 0.33
0164_0165 0.831 0.32
0029_0031 0.800 0.29
0062_0063 0.797 0.29
0036_0037 0.797 0.29
0067_0069 0.794 0.28
0065_0066 0.775 0.27
0090_0092 0.775 0.27
0004_0005 0.774 0.27
0219_0221 0.765 0.26
0025_0027 0.760 0.25
0218_0220 0.756 0.25
0011_0013 0.755 0.25
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M V G L T ...

Page generated in 0.012 seconds.