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OPENSEQ.org
EXBB - Biopolymer transport protein ExbB
UniProt: P0ABU7 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10271
Length: 244 (220)
Sequences: 2136
Seq/Len: 9.71
EXBB
Paralog alert: 0.73 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: EXBB TOLQ
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
154_N 176_E 3.333 1.00
135_T 193_V 3.2 1.00
86_H 122_V 3.054 1.00
41_F 194_I 3.044 1.00
67_S 70_Q 2.885 1.00
44_K 47_E 2.72 1.00
137_G 192_V 2.708 1.00
26_V 146_F 2.517 1.00
42_F 46_V 2.431 1.00
132_Y 136_I 2.366 1.00
185_L 189_I 2.234 1.00
135_T 196_N 2.176 1.00
90_E 118_R 1.95 1.00
123_G 206_K 1.856 1.00
130_N 202_I 1.741 1.00
155_S 173_G 1.671 1.00
37_T 191_A 1.636 1.00
37_T 41_F 1.547 1.00
40_I 132_Y 1.54 1.00
49_F 53_R 1.511 1.00
157_I 175_A 1.507 1.00
73_D 76_A 1.506 1.00
34_S 38_W 1.504 1.00
48_F 202_I 1.495 1.00
16_Y 27_M 1.472 1.00
142_F 152_I 1.471 1.00
19_A 23_V 1.442 1.00
177_A 181_T 1.436 1.00
91_A 114_R 1.425 1.00
146_F 186_V 1.421 1.00
149_V 181_T 1.409 0.99
91_A 115_L 1.386 0.99
30_L 187_A 1.358 0.99
197_V 201_Q 1.356 0.99
146_F 189_I 1.349 0.99
33_A 143_V 1.327 0.99
101_S 104_N 1.327 0.99
136_I 191_A 1.29 0.99
43_S 128_R 1.284 0.99
19_A 27_M 1.271 0.99
70_Q 73_D 1.268 0.99
156_F 173_G 1.266 0.99
87_L 118_R 1.26 0.99
62_L 212_V 1.257 0.99
73_D 77_D 1.256 0.98
139_I 193_V 1.253 0.98
146_F 182_A 1.25 0.98
191_A 195_Y 1.238 0.98
16_Y 24_K 1.237 0.98
35_V 39_A 1.233 0.98
142_F 188_A 1.223 0.98
50_N 54_R 1.222 0.98
119_V 213_A 1.21 0.98
159_I 164_T 1.205 0.98
65_A 71_A 1.202 0.98
14_G 18_H 1.191 0.98
156_F 175_A 1.191 0.98
28_I 32_L 1.189 0.98
88_L 212_V 1.189 0.98
122_V 125_Q 1.185 0.98
153_M 182_A 1.178 0.97
19_A 24_K 1.17 0.97
159_I 166_N 1.169 0.97
20_D 24_K 1.167 0.97
172_P 175_A 1.164 0.97
58_E 62_L 1.164 0.97
135_T 171_A 1.16 0.97
118_R 122_V 1.146 0.97
123_G 202_I 1.136 0.97
138_A 192_V 1.113 0.96
127_G 210_G 1.107 0.96
30_L 34_S 1.102 0.96
146_F 180_A 1.095 0.96
13_W 17_Q 1.094 0.96
100_G 104_N 1.086 0.95
153_M 180_A 1.085 0.95
131_G 200_R 1.084 0.95
139_I 171_A 1.084 0.95
50_N 53_R 1.079 0.95
20_D 154_N 1.079 0.95
43_S 47_E 1.079 0.95
145_L 175_A 1.064 0.95
113_F 116_E 1.063 0.95
29_G 143_V 1.063 0.95
71_A 75_A 1.056 0.94
137_G 190_P 1.056 0.94
102_D 105_E 1.055 0.94
115_L 209_L 1.054 0.94
146_F 150_W 1.053 0.94
69_N 72_N 1.051 0.94
153_M 167_L 1.048 0.94
11_S 14_G 1.044 0.94
66_R 70_Q 1.04 0.94
171_A 190_P 1.034 0.94
139_I 143_V 1.028 0.93
32_L 36_V 1.026 0.93
176_E 179_L 1.025 0.93
131_G 205_F 1.021 0.93
7_Q 102_D 1.013 0.93
56_K 208_M 1.012 0.93
62_L 215_Q 1.011 0.93
19_A 172_P 1.005 0.92
27_M 183_I 1.004 0.92
137_G 170_V 1.001 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4i5sA20.930313.90.959Contact Map0.144
3b5mA40.27875.20.966Contact Map0.028
1pi7A10.14755.20.966Contact Map0.242
3hlsA80.253.30.969Contact Map0.545
4hkrA20.356630.97Contact Map0.468
2nr4A20.39752.90.97Contact Map0
1ji6A10.40982.90.97Contact Map0.161
2k1aA10.17212.80.97Contact Map0.034
4go6A20.07792.60.971Contact Map
2rasA20.34022.50.971Contact Map0.153
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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