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OPENSEQ.org

PPDD - YACG
UniProt: P36647 - P0A8H8
Length: 211
Sequences: 184
Seq/Len: 0.90
I_Prob: 0.01

PPDD - Prepilin peptidase-dependent protein D
Paralog alert: 0.07 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: PPDD
YACG - DNA gyrase inhibitor YacG
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YACG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
4_Q 25_R 1.47 0.01
23_S 46_R 1.42 0.01
85_M 13_G 1.39 0.01
53_V 57_D 1.34 0.01
88_A 48_P 1.28 0.00
24_A 8_N 1.24 0.00
8_T 53_L 1.16 0.00
68_G 48_P 1.16 0.00
99_S 42_A 1.15 0.00
69_G 14_K 1.13 0.00
10_I 1_M 1.11 0.00
36_K 54_S 1.06 0.00
15_V 52_D 1.05 0.00
3_K 4_T 1.04 0.00
123_N 58_D 1.04 0.00
90_G 34_L 1.03 0.00
13_M 23_P 1.02 0.00
20_A 63_P 1.02 0.00
101_N 48_P 1.01 0.00
17_G 13_G 1.00 0.00
31_Q 23_P 1.00 0.00
24_A 29_S 0.98 0.00
38_A 33_Q 0.97 0.00
90_G 31_R 0.95 0.00
121_T 19_G 0.95 0.00
106_V 29_S 0.94 0.00
14_V 13_G 0.94 0.00
49_Y 30_K 0.94 0.00
38_A 45_K 0.94 0.00
60_H 29_S 0.92 0.00
26_G 48_P 0.91 0.00
102_G 13_G 0.91 0.00
27_I 4_T 0.91 0.00
16_I 58_D 0.90 0.00
61_G 52_D 0.90 0.00
107_M 29_S 0.90 0.00
120_W 38_G 0.89 0.00
16_I 62_E 0.89 0.00
4_Q 60_S 0.88 0.00
3_K 11_T 0.88 0.00
43_L 16_V 0.86 0.00
91_V 2_S 0.86 0.00
51_T 5_I 0.85 0.00
116_G 19_G 0.85 0.00
60_H 39_E 0.84 0.00
21_I 31_R 0.84 0.00
5_R 15_T 0.84 0.00
14_V 19_G 0.84 0.00
36_K 39_E 0.84 0.00
56_C 37_L 0.82 0.00
3_K 31_R 0.82 0.00
70_S 6_T 0.82 0.00
103_L 46_R 0.81 0.00
90_G 35_I 0.81 0.00
56_C 22_S 0.81 0.00
113_N 57_D 0.81 0.00
117_V 29_S 0.81 0.00
20_A 62_E 0.81 0.00
89_K 4_T 0.81 0.00
55_L 30_K 0.80 0.00
50_R 45_K 0.80 0.00
73_I 14_K 0.80 0.00
110_G 20_E 0.80 0.00
43_L 44_E 0.79 0.00
41_D 49_S 0.79 0.00
50_R 29_S 0.78 0.00
102_G 24_F 0.77 0.00
127_Q 20_E 0.77 0.00
6_G 23_P 0.77 0.00
115_N 8_N 0.77 0.00
123_N 19_G 0.77 0.00
41_D 46_R 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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