May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

MANB - RMLA1
UniProt: P24175 - P37744
Length: 749
Sequences: 724
Seq/Len: 1.02
I_Prob: 0.00

MANB - Phosphomannomutase
Paralog alert: 0.94 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: GLMM MANB PGM
RMLA1 - Glucose-1-phosphate thymidylyltransferase 1
Paralog alert: 0.90 [within 20: 0.20] - ratio of genomes with paralogs
Cluster includes: GALF GALU RMLA1 RMLA2
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
351_V 7_I 1.14 0.00
12_I 208_L 0.93 0.00
415_A 103_D 0.91 0.00
193_F 52_I 0.89 0.00
432_L 209_E 0.85 0.00
307_S 196_G 0.81 0.00
298_T 85_S 0.81 0.00
237_G 189_N 0.80 0.00
234_I 52_I 0.79 0.00
83_A 185_Q 0.78 0.00
193_F 170_N 0.77 0.00
93_I 48_G 0.76 0.00
371_A 210_Q 0.76 0.00
171_L 157_A 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.9869 seconds.