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OPENSEQ.org

FECI - RNC
UniProt: P23484 - P0A7Y0
Length: 399
Sequences: 253
Seq/Len: 0.67
I_Prob: 0.01

FECI - Probable RNA polymerase sigma factor FecI
Paralog alert: 0.66 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: FECI RPOE
RNC - Ribonuclease 3
Paralog alert: 0.05 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
117_M 46_S 1.59 0.01
10_S 48_L 1.40 0.00
164_C 25_Q 1.40 0.00
116_S 136_I 1.38 0.00
31_K 132_V 1.35 0.00
14_E 71_M 1.30 0.00
123_G 84_L 1.27 0.00
166_L 124_F 1.27 0.00
123_G 77_R 1.20 0.00
11_L 36_H 1.19 0.00
70_K 71_M 1.17 0.00
41_I 145_D 1.15 0.00
135_D 79_N 1.15 0.00
15_S 69_S 1.14 0.00
109_E 22_L 1.14 0.00
134_L 51_V 1.14 0.00
83_E 133_E 1.11 0.00
118_L 121_G 1.10 0.00
164_C 84_L 1.09 0.00
9_A 57_Y 1.08 0.00
41_I 61_P 1.08 0.00
34_S 73_A 1.03 0.00
72_V 73_A 1.03 0.00
26_S 109_E 1.03 0.00
141_E 48_L 1.03 0.00
38_A 53_A 1.02 0.00
117_M 11_R 1.02 0.00
145_K 219_A 1.02 0.00
79_R 20_Q 1.02 0.00
141_E 139_W 1.01 0.00
115_D 49_S 1.01 0.00
37_D 71_M 1.01 0.00
110_T 124_F 1.01 0.00
58_I 119_L 1.00 0.00
117_M 33_S 1.00 0.00
31_K 143_R 0.99 0.00
45_T 61_P 0.98 0.00
129_F 25_Q 0.98 0.00
150_I 80_T 0.98 0.00
126_R 85_A 0.97 0.00
70_K 90_L 0.97 0.00
38_A 132_V 0.96 0.00
54_T 95_R 0.96 0.00
15_S 177_V 0.95 0.00
90_L 57_Y 0.95 0.00
110_T 48_L 0.95 0.00
83_E 179_V 0.94 0.00
120_G 57_Y 0.94 0.00
80_N 203_G 0.94 0.00
145_K 13_L 0.93 0.00
38_A 60_F 0.93 0.00
76_L 163_Y 0.93 0.00
118_L 107_R 0.93 0.00
122_N 72_R 0.92 0.00
108_L 176_V 0.91 0.00
114_L 123_V 0.91 0.00
144_H 134_K 0.91 0.00
22_G 98_P 0.91 0.00
150_I 129_I 0.91 0.00
165_L 109_E 0.91 0.00
79_R 61_P 0.91 0.00
53_E 8_R 0.91 0.00
165_L 54_N 0.90 0.00
47_L 194_V 0.90 0.00
54_T 197_L 0.90 0.00
126_R 194_V 0.90 0.00
81_A 35_K 0.89 0.00
53_E 121_G 0.89 0.00
23_W 69_S 0.89 0.00
85_A 52_I 0.89 0.00
35_A 119_L 0.89 0.00
49_V 114_D 0.88 0.00
22_G 54_N 0.88 0.00
31_K 210_K 0.87 0.00
135_D 46_S 0.87 0.00
118_L 200_P 0.87 0.00
32_L 207_S 0.87 0.00
92_L 131_T 0.87 0.00
35_A 197_L 0.87 0.00
150_I 135_L 0.86 0.00
115_D 98_P 0.86 0.00
70_K 40_L 0.86 0.00
87_L 18_N 0.85 0.00
104_R 77_R 0.85 0.00
135_D 123_V 0.85 0.00
37_D 36_H 0.85 0.00
94_P 195_S 0.85 0.00
115_D 36_H 0.85 0.00
101_P 70_R 0.84 0.00
28_L 177_V 0.84 0.00
119_D 116_V 0.84 0.00
129_F 21_E 0.84 0.00
72_V 156_P 0.84 0.00
106_S 71_M 0.84 0.00
56_S 207_S 0.84 0.00
137_L 166_G 0.83 0.00
97_G 121_G 0.83 0.00
25_K 197_L 0.83 0.00
112_Q 197_L 0.82 0.00
105_E 182_E 0.82 0.00
145_K 128_D 0.82 0.00
28_L 115_T 0.82 0.00
114_L 88_F 0.82 0.00
133_Q 70_R 0.82 0.00
126_R 202_V 0.82 0.00
14_E 111_I 0.82 0.00
41_I 131_T 0.82 0.00
79_R 136_I 0.82 0.00
113_L 136_I 0.82 0.00
27_W 166_G 0.82 0.00
95_E 206_S 0.81 0.00
77_F 171_L 0.81 0.00
100_S 88_F 0.81 0.00
71_R 165_Q 0.81 0.00
37_D 201_V 0.81 0.00
23_W 50_Y 0.80 0.00
90_L 142_T 0.80 0.00
24_L 95_R 0.80 0.00
101_P 103_S 0.80 0.00
105_E 46_S 0.80 0.00
49_V 108_R 0.80 0.00
128_A 207_S 0.80 0.00
70_K 222_K 0.80 0.00
124_K 88_F 0.80 0.00
91_A 223_L 0.80 0.00
142_I 165_Q 0.79 0.00
83_E 136_I 0.79 0.00
144_H 53_A 0.79 0.00
112_Q 19_H 0.79 0.00
80_N 54_N 0.79 0.00
16_L 22_L 0.79 0.00
33_Q 168_H 0.79 0.00
134_L 19_H 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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