May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LPXD - PYRH
UniProt: P21645 - P0A7E9
Length: 582
Sequences: 352
Seq/Len: 0.61
I_Prob: 0.00

LPXD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
Paralog alert: 0.09 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: LPXD
PYRH - Uridylate kinase
Paralog alert: 0.90 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: PYRH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
268_G 53_V 1.35 0.00
8_D 172_T 1.16 0.00
39_I 12_I 1.11 0.00
307_L 164_A 1.08 0.00
253_V 10_K 1.03 0.00
176_T 187_L 1.03 0.00
335_R 195_K 1.01 0.00
154_L 188_T 1.01 0.00
106_I 191_E 1.00 0.00
173_Q 239_I 0.97 0.00
90_L 114_C 0.97 0.00
273_I 194_E 0.96 0.00
174_S 202_L 0.95 0.00
9_L 125_L 0.95 0.00
238_A 69_A 0.94 0.00
154_L 186_Q 0.94 0.00
214_T 195_K 0.93 0.00
57_S 125_L 0.93 0.00
219_A 93_D 0.93 0.00
46_K 195_K 0.92 0.00
205_D 159_D 0.92 0.00
161_Y 161_V 0.91 0.00
90_L 100_V 0.90 0.00
116_V 41_I 0.90 0.00
130_L 123_I 0.90 0.00
139_G 188_T 0.90 0.00
142_V 133_I 0.90 0.00
172_I 172_T 0.90 0.00
118_I 24_T 0.90 0.00
71_S 172_T 0.89 0.00
226_G 178_D 0.89 0.00
140_C 91_M 0.89 0.00
131_G 198_K 0.89 0.00
15_A 189_Y 0.89 0.00
166_I 35_D 0.89 0.00
116_V 160_V 0.88 0.00
315_K 10_K 0.87 0.00
230_I 104_L 0.87 0.00
295_I 50_Q 0.86 0.00
25_I 199_V 0.86 0.00
196_P 67_A 0.86 0.00
46_K 24_T 0.86 0.00
236_Q 36_R 0.86 0.00
46_K 86_M 0.85 0.00
316_T 41_I 0.85 0.00
215_I 162_L 0.85 0.00
39_I 125_L 0.85 0.00
226_G 173_A 0.84 0.00
172_I 188_T 0.84 0.00
13_L 51_V 0.84 0.00
139_G 126_L 0.84 0.00
142_V 41_I 0.83 0.00
272_V 66_L 0.83 0.00
54_C 172_T 0.83 0.00
185_Y 205_F 0.83 0.00
287_G 95_L 0.82 0.00
281_D 158_A 0.82 0.00
305_I 37_M 0.81 0.00
234_Q 212_K 0.81 0.00
304_G 108_I 0.81 0.00
24_V 173_A 0.81 0.00
243_I 179_P 0.81 0.00
238_A 196_E 0.81 0.00
13_L 230_V 0.81 0.00
142_V 68_K 0.81 0.00
32_Q 8_V 0.81 0.00
234_Q 147_S 0.81 0.00
196_P 99_Y 0.80 0.00
282_K 187_L 0.80 0.00
164_I 40_E 0.79 0.00
299_G 16_L 0.79 0.00
185_Y 67_A 0.79 0.00
185_Y 240_T 0.79 0.00
209_I 177_K 0.79 0.00
256_A 158_A 0.79 0.00
25_I 65_G 0.78 0.00
157_N 52_G 0.78 0.00
86_M 129_N 0.78 0.00
222_D 48_G 0.78 0.00
238_A 112_G 0.78 0.00
25_I 156_I 0.78 0.00
90_L 46_E 0.78 0.00
6_L 126_L 0.77 0.00
57_S 195_K 0.77 0.00
163_E 225_A 0.77 0.00
113_G 219_N 0.77 0.00
63_Q 172_T 0.77 0.00
267_I 159_D 0.77 0.00
253_V 195_K 0.77 0.00
166_I 91_M 0.77 0.00
295_I 156_I 0.77 0.00
313_W 226_L 0.77 0.00
332_S 53_V 0.77 0.00
202_I 160_V 0.77 0.00
224_I 53_V 0.76 0.00
132_D 153_G 0.76 0.00
256_A 153_G 0.76 0.00
231_I 116_S 0.76 0.00
306_P 206_T 0.76 0.00
172_I 133_I 0.76 0.00
164_I 192_V 0.76 0.00
136_I 47_L 0.76 0.00
251_G 55_I 0.76 0.00
279_I 97_R 0.75 0.00
251_G 101_N 0.75 0.00
148_I 8_V 0.75 0.00
289_G 219_N 0.75 0.00
306_P 60_L 0.75 0.00
230_I 112_G 0.75 0.00
110_A 233_E 0.75 0.00
295_I 162_L 0.75 0.00
178_V 215_I 0.75 0.00
252_G 208_A 0.74 0.00
10_A 82_L 0.74 0.00
238_A 172_T 0.74 0.00
214_T 172_T 0.74 0.00
208_E 208_A 0.74 0.00
111_K 188_T 0.74 0.00
68_F 12_I 0.74 0.00
299_G 236_G 0.73 0.00
75_V 212_K 0.73 0.00
206_R 8_V 0.73 0.00
194_K 78_H 0.73 0.00
127_G 159_D 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.749 seconds.