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OPENSEQ.org

HPF - LPTA
UniProt: P0AFX0 - P0ADV1
Length: 280
Sequences: 210
Seq/Len: 0.82
I_Prob: 0.01

HPF - Ribosome hibernation promoting factor
Paralog alert: 0.26 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HPF RAIA
LPTA - Lipopolysaccharide export system protein LptA
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LPTA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
2_Q 131_Q 1.56 0.01
54_L 109_A 1.47 0.01
61_I 95_F 1.31 0.01
54_L 38_I 1.30 0.01
78_I 109_A 1.27 0.01
15_A 68_N 1.25 0.01
37_V 91_K 1.23 0.01
24_F 121_V 1.21 0.01
13_T 127_A 1.19 0.01
14_E 71_K 1.18 0.01
81_L 31_D 1.18 0.01
33_R 74_V 1.17 0.01
26_K 134_S 1.16 0.01
86_T 112_M 1.15 0.01
40_V 98_M 1.13 0.00
69_D 60_V 1.13 0.00
60_E 138_G 1.12 0.00
69_D 39_E 1.09 0.00
55_H 40_S 1.09 0.00
77_L 143_Y 1.08 0.00
46_V 167_S 1.08 0.00
65_A 17_S 1.08 0.00
30_Y 123_L 1.07 0.00
70_M 62_Q 1.06 0.00
61_I 140_K 1.06 0.00
21_T 164_L 1.05 0.00
56_V 144_L 1.05 0.00
91_K 165_V 1.05 0.00
48_H 37_H 1.04 0.00
86_T 47_M 1.03 0.00
54_L 93_A 1.03 0.00
64_S 134_S 1.02 0.00
15_A 86_I 1.02 0.00
65_A 136_I 1.02 0.00
93_K 86_I 1.01 0.00
52_A 62_Q 1.01 0.00
14_E 167_S 1.00 0.00
26_K 53_T 1.00 0.00
63_A 131_Q 0.98 0.00
84_Q 127_A 0.98 0.00
82_A 144_L 0.98 0.00
43_V 129_L 0.97 0.00
54_L 161_T 0.97 0.00
14_E 36_I 0.97 0.00
11_E 22_S 0.97 0.00
9_N 23_I 0.96 0.00
78_I 123_L 0.96 0.00
54_L 119_D 0.96 0.00
93_K 40_S 0.96 0.00
32_D 80_E 0.95 0.00
92_L 67_I 0.95 0.00
56_V 57_N 0.93 0.00
5_I 158_K 0.93 0.00
25_A 154_S 0.92 0.00
35_N 50_N 0.92 0.00
12_I 64_T 0.92 0.00
27_L 134_S 0.91 0.00
50_S 70_D 0.91 0.00
68_Q 60_V 0.91 0.00
78_I 28_V 0.91 0.00
78_I 71_K 0.91 0.00
41_L 131_Q 0.91 0.00
12_I 34_Q 0.90 0.00
62_H 87_D 0.90 0.00
48_H 173_N 0.90 0.00
15_A 55_T 0.90 0.00
19_F 98_M 0.89 0.00
95_H 84_E 0.89 0.00
90_D 62_Q 0.89 0.00
62_H 165_V 0.89 0.00
24_F 70_D 0.89 0.00
78_I 60_V 0.88 0.00
84_Q 141_I 0.88 0.00
41_L 167_S 0.88 0.00
83_R 97_Q 0.88 0.00
42_K 40_S 0.87 0.00
88_H 67_I 0.87 0.00
52_A 43_Q 0.87 0.00
95_H 162_T 0.86 0.00
53_T 40_S 0.86 0.00
10_V 109_A 0.85 0.00
69_D 171_D 0.85 0.00
83_R 63_G 0.85 0.00
6_T 161_T 0.85 0.00
40_V 44_S 0.85 0.00
86_T 132_V 0.85 0.00
54_L 56_G 0.85 0.00
31_F 61_T 0.85 0.00
94_Q 126_N 0.85 0.00
62_H 46_D 0.84 0.00
85_L 96_Y 0.84 0.00
29_Q 53_T 0.84 0.00
78_I 164_L 0.84 0.00
40_V 121_V 0.84 0.00
20_V 172_K 0.83 0.00
72_A 72_V 0.83 0.00
60_E 95_F 0.83 0.00
71_Y 58_V 0.83 0.00
4_N 125_G 0.83 0.00
10_V 93_A 0.83 0.00
9_N 167_S 0.82 0.00
17_R 57_N 0.82 0.00
90_D 54_F 0.82 0.00
42_K 111_Q 0.82 0.00
8_N 64_T 0.82 0.00
61_I 105_V 0.82 0.00
71_Y 107_G 0.81 0.00
16_L 66_K 0.81 0.00
11_E 21_A 0.81 0.00
61_I 156_K 0.81 0.00
15_A 48_Q 0.81 0.00
3_L 25_A 0.81 0.00
14_E 145_V 0.80 0.00
52_A 141_I 0.80 0.00
25_A 26_F 0.80 0.00
82_A 123_L 0.80 0.00
35_N 134_S 0.80 0.00
50_S 88_G 0.79 0.00
9_N 13_V 0.79 0.00
49_T 65_I 0.79 0.00
5_I 106_E 0.79 0.00
84_Q 136_I 0.79 0.00
92_L 142_T 0.79 0.00
23_K 63_G 0.79 0.00
87_K 46_D 0.79 0.00
85_L 125_G 0.78 0.00
40_V 126_N 0.78 0.00
92_L 133_D 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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