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OPENSEQ.org
NUOH - NUOK
UniProt: P0AFD4 - P0AFE4
Length: 425
Sequences: 1956
Seq/Len: 4.79
I_Prob: 0.20
NUOH - NADH-quinone oxidoreductase subunit H
Paralog alert: 0.24 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: HYCD HYFC NUOH 		NUOK - NADH-quinone oxidoreductase subunit K
Paralog alert: 0.08 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOK
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4he8HC:KEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
231_G 29_L 1.18 0.20
132_F 29_L 1.18 0.20
247_T 32_L 1.11 0.17
140_K 74_S 1.08 0.15
139_N 81_L 1.08 0.15
240_G 79_L 1.08 0.15
100_I 33_I 1.07 0.15
292_P 30_F 1.01 0.12
305_C 40_N 1.01 0.12
258_G 18_G 1.00 0.12
131_L 44_L 0.99 0.12
82_I 74_S 0.97 0.11
64_M 32_L 0.92 0.09
52_V 33_I 0.91 0.09
125_L 59_Q 0.91 0.09
231_G 45_A 0.91 0.09
171_A 35_L 0.90 0.08
227_I 64_L 0.88 0.08
23_L 13_I 0.87 0.08
35_G 90_L 0.87 0.07
277_F 16_V 0.87 0.07
144_L 81_L 0.86 0.07
246_V 63_I 0.86 0.07
204_V 32_L 0.84 0.07
16_L 34_G 0.83 0.07
120_L 78_A 0.82 0.06
94_L 87_R 0.82 0.06
12_L 28_L 0.82 0.06
231_G 66_I 0.81 0.06
179_I 39_I 0.81 0.06
154_L 62_Y 0.81 0.06
127_V 92_I 0.81 0.06
160_L 46_F 0.80 0.06
165_M 29_L 0.80 0.06
86_A 58_G 0.80 0.06
242_Y 77_L 0.79 0.06
143_L 68_L 0.79 0.06
111_D 41_A 0.78 0.05
192_Q 3_P 0.77 0.05
133_A 9_I 0.77 0.05
120_L 77_L 0.77 0.05
203_G 74_S 0.77 0.05
150_S 69_A 0.77 0.05
64_M 2_I 0.77 0.05
172_G 21_G 0.76 0.05
81_V 10_L 0.76 0.05
143_L 73_A 0.76 0.05
65_I 39_I 0.76 0.05
200_A 80_L 0.76 0.05
277_F 38_M 0.76 0.05
168_V 92_I 0.76 0.05
69_F 44_L 0.75 0.05
317_A 6_H 0.75 0.05
210_H 73_A 0.75 0.05
19_V 5_Q 0.75 0.05
269_I 62_Y 0.75 0.05
234_F 32_L 0.75 0.05
158_V 88_Q 0.75 0.05
210_H 92_I 0.74 0.05
140_K 23_V 0.74 0.05
24_V 21_G 0.74 0.05
285_I 60_V 0.74 0.05
278_F 58_G 0.74 0.05
65_I 14_L 0.74 0.04
205_A 74_S 0.74 0.04
60_L 62_Y 0.73 0.04
221_L 16_V 0.73 0.04
128_Y 81_L 0.73 0.04
19_V 2_I 0.73 0.04
179_I 37_I 0.73 0.04
303_K 70_A 0.73 0.04
245_I 7_G 0.72 0.04
164_L 35_L 0.72 0.04
169_A 78_A 0.72 0.04
287_A 66_I 0.72 0.04
39_L 68_L 0.72 0.04
94_L 92_I 0.72 0.04
240_G 28_L 0.71 0.04
316_T 3_P 0.71 0.04
93_S 34_G 0.71 0.04
238_F 5_Q 0.71 0.04
34_F 2_I 0.71 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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