May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PPIC - THIO
UniProt: P0A9L5 - P0AA25
Length: 202
Sequences: 184
Seq/Len: 0.94
I_Prob: 0.04

PPIC - Peptidyl-prolyl cis-trans isomerase C
Paralog alert: 0.67 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: PPIC
THIO - Thioredoxin-1
Paralog alert: 0.85 [within 20: 0.11] - ratio of genomes with paralogs
Cluster includes: THIO2 THIO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_G 104_L 1.58 0.04
80_T 81_L 1.34 0.02
12_V 29_W 1.12 0.01
20_D 73_I 1.12 0.01
46_R 88_A 1.10 0.01
33_K 108_L 1.01 0.01
21_L 23_A 0.96 0.01
41_C 87_V 0.94 0.01
50_L 54_L 0.93 0.01
77_P 46_I 0.93 0.01
25_I 60_N 0.93 0.01
21_L 62_D 0.92 0.01
91_Y 107_N 0.91 0.01
23_E 104_L 0.91 0.01
5_A 23_A 0.91 0.01
41_C 52_G 0.86 0.00
9_H 60_N 0.86 0.00
64_K 100_L 0.86 0.00
80_T 5_I 0.84 0.00
68_S 72_G 0.83 0.00
57_Q 73_I 0.82 0.00
65_V 28_F 0.82 0.00
18_A 98_G 0.81 0.00
33_K 59_L 0.81 0.00
90_L 99_Q 0.81 0.00
92_R 106_A 0.80 0.00
37_K 46_I 0.80 0.00
30_D 59_L 0.79 0.00
40_I 29_W 0.79 0.00
62_F 84_N 0.79 0.00
4_T 56_V 0.79 0.00
75_T 61_I 0.79 0.00
44_G 43_L 0.78 0.00
78_L 31_E 0.78 0.00
12_V 92_V 0.78 0.00
9_H 68_A 0.78 0.00
46_R 52_G 0.78 0.00
60_P 89_A 0.76 0.00
39_S 60_N 0.76 0.00
66_V 68_A 0.76 0.00
39_S 45_E 0.76 0.00
77_P 80_L 0.76 0.00
80_T 71_Y 0.76 0.00
67_F 75_G 0.74 0.00
70_P 104_L 0.74 0.00
74_P 83_K 0.74 0.00
16_K 25_L 0.73 0.00
80_T 49_E 0.73 0.00
78_L 80_L 0.73 0.00
18_A 85_G 0.73 0.00
86_I 55_T 0.72 0.00
34_L 11_D 0.72 0.00
20_D 24_I 0.72 0.00
41_C 98_G 0.72 0.00
8_L 89_A 0.72 0.00
87_I 75_G 0.72 0.00
39_S 102_E 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.6423 seconds.