May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RRF - RS2
UniProt: P0A805 - P0A7V0
Length: 426
Sequences: 748
Seq/Len: 1.81
I_Prob: 0.05

RRF - Ribosome-recycling factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RRF
RS2 - 30S ribosomal protein S2
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RS2
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
16_C 109_Q 1.31 0.05
109_R 65_G 1.24 0.04
68_N 104_W 1.21 0.04
181_E 115_K 1.15 0.03
90_N 112_K 1.11 0.03
94_A 42_N 1.06 0.02
60_E 22_Y 1.01 0.02
168_I 85_L 0.96 0.02
94_A 22_Y 0.95 0.02
109_R 115_K 0.94 0.02
37_L 111_I 0.94 0.02
126_V 161_L 0.94 0.02
184_Q 171_I 0.93 0.01
20_F 173_I 0.93 0.01
104_P 157_L 0.92 0.01
117_V 142_E 0.89 0.01
175_L 202_G 0.89 0.01
55_A 86_S 0.88 0.01
56_S 100_M 0.88 0.01
37_L 12_A 0.88 0.01
67_I 142_E 0.87 0.01
60_E 75_A 0.86 0.01
86_D 89_Q 0.86 0.01
139_V 217_V 0.86 0.01
69_V 83_A 0.85 0.01
101_P 7_R 0.84 0.01
116_I 79_A 0.83 0.01
57_V 12_A 0.82 0.01
182_L 196_V 0.82 0.01
33_S 185_A 0.81 0.01
28_R 173_I 0.81 0.01
104_P 80_V 0.81 0.01
109_R 78_E 0.80 0.01
125_R 49_M 0.80 0.01
98_I 69_F 0.80 0.01
86_D 141_L 0.80 0.01
29_T 34_A 0.80 0.01
94_A 75_A 0.79 0.01
119_G 211_T 0.79 0.01
183_M 152_K 0.78 0.01
93_S 7_R 0.78 0.01
11_V 5_S 0.78 0.01
28_R 158_P 0.78 0.01
26_K 110_S 0.78 0.01
27_I 164_I 0.78 0.01
154_R 171_I 0.78 0.01
1_M 58_N 0.78 0.01
29_T 129_L 0.78 0.01
27_I 153_D 0.77 0.01
69_V 104_W 0.77 0.01
78_V 65_G 0.77 0.01
163_L 112_K 0.76 0.01
84_A 163_V 0.76 0.01
34_P 11_K 0.76 0.01
57_V 163_V 0.75 0.01
181_E 185_A 0.75 0.01
113_L 46_T 0.75 0.01
104_P 33_G 0.75 0.01
182_L 167_D 0.75 0.01
71_D 104_W 0.74 0.01
58_T 56_E 0.74 0.01
49_T 47_V 0.74 0.01
176_A 100_M 0.73 0.01
62_S 153_D 0.73 0.01
68_N 161_L 0.73 0.01
182_L 94_H 0.73 0.01
136_N 140_E 0.72 0.01
40_I 156_G 0.72 0.01
29_T 8_D 0.72 0.01
125_R 53_A 0.72 0.01
76_P 60_I 0.72 0.01
20_F 47_V 0.72 0.01
29_T 170_H 0.72 0.01
141_A 56_E 0.72 0.01
173_A 192_D 0.72 0.01
40_I 101_L 0.72 0.01
139_V 198_F 0.72 0.01
128_V 46_T 0.71 0.01
136_N 152_K 0.71 0.01
26_K 33_G 0.71 0.01
114_T 198_F 0.71 0.01
117_V 100_M 0.71 0.01
70_F 28_K 0.71 0.01
139_V 145_E 0.71 0.01
80_K 185_A 0.71 0.01
72_R 153_D 0.71 0.01
34_P 153_D 0.71 0.01
34_P 117_L 0.71 0.01
125_R 88_D 0.70 0.01
165_D 171_I 0.70 0.01
52_R 30_F 0.70 0.01
109_R 158_P 0.70 0.01
165_D 124_G 0.70 0.01
100_V 77_S 0.70 0.01
87_L 114_L 0.70 0.01
116_I 65_G 0.70 0.01
62_S 9_M 0.70 0.01
160_V 29_P 0.70 0.01
171_I 7_R 0.70 0.01
121_A 202_G 0.69 0.01
59_V 80_V 0.69 0.01
19_A 114_L 0.69 0.01
128_V 218_A 0.69 0.01
139_V 74_R 0.69 0.01
4_D 183_V 0.69 0.01
155_R 219_A 0.69 0.01
49_T 149_G 0.69 0.01
4_D 185_A 0.68 0.01
136_N 162_F 0.68 0.01
5_I 197_D 0.68 0.01
125_R 177_N 0.68 0.01
130_N 158_P 0.68 0.01
168_I 183_V 0.68 0.01
49_T 148_L 0.68 0.01
6_R 156_G 0.68 0.01
184_Q 56_E 0.68 0.01
176_A 184_F 0.68 0.01
60_E 168_H 0.68 0.01
124_A 108_R 0.67 0.01
159_D 217_V 0.67 0.01
10_E 9_M 0.67 0.01
23_Q 22_Y 0.67 0.01
39_G 114_L 0.67 0.01
18_E 116_D 0.67 0.01
61_D 59_K 0.67 0.01
66_K 173_I 0.67 0.01
137_D 68_L 0.67 0.01
78_V 147_S 0.67 0.01
33_S 134_A 0.67 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.6654 seconds.