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OPENSEQ.org

RPOA - RS17
UniProt: P0A7Z4 - P0AG63
Length: 413
Sequences: 664
Seq/Len: 1.66
I_Prob: 0.03

RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
RS17 - 30S ribosomal protein S17
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS17
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
80_E 73_W 1.31 0.03
303_I 27_R 1.14 0.02
203_I 70_T 1.11 0.02
119_G 22_V 1.11 0.02
213_P 70_T 1.10 0.02
182_R 45_H 1.06 0.01
285_T 75_L 1.04 0.01
284_R 35_G 1.02 0.01
80_E 36_K 1.00 0.01
180_V 33_I 0.97 0.01
113_A 50_N 0.94 0.01
194_Q 30_K 0.93 0.01
169_G 29_V 0.92 0.01
200_K 28_F 0.91 0.01
81_I 67_L 0.91 0.01
196_T 30_K 0.90 0.01
188_E 13_V 0.89 0.01
85_L 45_H 0.88 0.01
256_P 35_G 0.88 0.01
196_T 73_W 0.87 0.01
116_T 28_F 0.86 0.01
239_Q 28_F 0.86 0.01
295_L 11_R 0.86 0.01
37_H 53_C 0.86 0.01
123_I 52_E 0.85 0.01
107_I 75_L 0.84 0.01
252_I 13_V 0.84 0.01
56_V 56_G 0.83 0.01
39_L 20_S 0.83 0.01
136_E 61_I 0.82 0.01
184_A 24_A 0.82 0.01
192_V 34_Y 0.82 0.01
105_S 76_V 0.81 0.01
190_A 41_T 0.81 0.01
131_C 9_Q 0.81 0.01
165_E 77_R 0.81 0.01
16_I 9_Q 0.80 0.01
218_R 69_K 0.79 0.01
202_V 72_S 0.79 0.01
56_V 49_E 0.79 0.01
110_V 23_V 0.79 0.01
191_R 35_G 0.77 0.01
101_T 13_V 0.77 0.01
211_I 18_E 0.77 0.01
138_A 61_I 0.77 0.01
30_P 61_I 0.77 0.01
259_D 78_V 0.77 0.01
115_I 55_I 0.77 0.01
173_V 81_K 0.76 0.01
203_I 42_T 0.76 0.01
203_I 75_L 0.75 0.01
273_E 67_L 0.75 0.01
137_N 40_R 0.75 0.01
197_D 52_E 0.75 0.01
275_I 18_E 0.75 0.01
318_L 65_R 0.74 0.01
119_G 75_L 0.74 0.01
176_C 31_H 0.73 0.01
286_E 56_G 0.73 0.01
36_G 46_V 0.73 0.01
205_M 16_K 0.73 0.01
275_I 7_T 0.72 0.01
51_M 73_W 0.72 0.01
295_L 37_F 0.72 0.01
187_V 13_V 0.72 0.01
51_M 6_R 0.71 0.01
132_H 30_K 0.71 0.01
171_L 75_L 0.71 0.01
57_T 21_I 0.71 0.01
105_S 32_P 0.71 0.01
146_V 61_I 0.70 0.01
157_T 22_V 0.70 0.01
212_D 44_L 0.70 0.01
68_Y 62_R 0.70 0.01
291_K 80_E 0.70 0.01
248_E 38_I 0.70 0.01
164_D 42_T 0.70 0.01
70_T 69_K 0.70 0.01
245_E 20_S 0.70 0.01
186_N 58_V 0.70 0.01
186_N 46_V 0.69 0.01
85_L 41_T 0.69 0.01
2_Q 67_L 0.69 0.01
103_N 79_V 0.69 0.01
190_A 25_I 0.69 0.01
225_A 41_T 0.69 0.01
7_E 15_D 0.69 0.00
83_L 11_R 0.69 0.00
314_L 73_W 0.69 0.00
279_G 79_V 0.69 0.00
114_D 64_C 0.68 0.00
260_L 13_V 0.68 0.00
176_C 6_R 0.68 0.00
220_A 70_T 0.68 0.00
13_L 22_V 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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