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OPENSEQ.org

PDXJ - RNC
UniProt: P0A794 - P0A7Y0
Length: 469
Sequences: 275
Seq/Len: 0.60
I_Prob: 0.01

PDXJ - Pyridoxine 5'-phosphate synthase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PDXJ
RNC - Ribonuclease 3
Paralog alert: 0.05 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
241_A 53_A 1.64 0.01
178_A 205_G 1.52 0.01
116_M 123_V 1.52 0.01
150_P 121_G 1.46 0.01
13_I 204_T 1.41 0.00
178_A 53_A 1.26 0.00
154_I 185_D 1.23 0.00
13_I 218_Q 1.23 0.00
202_A 69_S 1.20 0.00
169_A 119_L 1.18 0.00
205_A 176_V 1.16 0.00
31_A 126_D 1.16 0.00
90_F 139_W 1.09 0.00
36_Q 156_P 1.09 0.00
199_N 72_R 1.07 0.00
219_I 136_I 1.06 0.00
206_I 169_L 1.05 0.00
53_I 104_G 1.04 0.00
127_G 203_G 1.04 0.00
114_D 201_V 1.04 0.00
160_A 164_L 1.03 0.00
190_N 164_L 1.03 0.00
197_Y 219_A 1.02 0.00
41_G 139_W 1.02 0.00
206_I 57_Y 1.02 0.00
137_D 59_R 1.02 0.00
150_P 32_A 1.01 0.00
26_D 109_E 1.01 0.00
241_A 115_T 1.01 0.00
91_C 124_F 1.00 0.00
197_Y 158_T 1.00 0.00
174_R 191_H 1.00 0.00
44_V 164_L 1.00 0.00
217_A 192_C 0.99 0.00
162_A 207_S 0.99 0.00
89_H 50_Y 0.99 0.00
58_V 164_L 0.98 0.00
224_M 53_A 0.97 0.00
237_L 103_S 0.97 0.00
175_I 54_N 0.96 0.00
13_I 12_K 0.96 0.00
56_R 131_T 0.96 0.00
13_I 132_V 0.96 0.00
31_A 17_F 0.96 0.00
63_Q 218_Q 0.95 0.00
91_C 190_I 0.94 0.00
18_N 64_D 0.93 0.00
116_M 163_Y 0.93 0.00
126_A 167_R 0.93 0.00
185_L 128_D 0.93 0.00
67_T 47_I 0.93 0.00
85_E 57_Y 0.92 0.00
201_K 25_Q 0.92 0.00
174_R 218_Q 0.92 0.00
238_M 133_E 0.92 0.00
217_A 140_Y 0.92 0.00
84_V 149_P 0.92 0.00
152_I 146_E 0.91 0.00
71_L 217_E 0.91 0.00
154_I 132_V 0.90 0.00
41_G 120_I 0.90 0.00
26_D 140_Y 0.90 0.00
197_Y 96_L 0.90 0.00
194_G 82_A 0.90 0.00
174_R 177_V 0.89 0.00
13_I 214_A 0.89 0.00
196_T 77_R 0.89 0.00
199_N 140_Y 0.89 0.00
220_G 140_Y 0.89 0.00
10_I 129_I 0.89 0.00
204_A 90_L 0.88 0.00
18_N 132_V 0.88 0.00
160_A 72_R 0.88 0.00
16_L 209_R 0.88 0.00
160_A 30_R 0.88 0.00
119_A 123_V 0.88 0.00
146_E 135_L 0.87 0.00
127_G 112_L 0.87 0.00
190_N 186_Q 0.87 0.00
122_R 52_I 0.87 0.00
206_I 64_D 0.87 0.00
117_R 13_L 0.87 0.00
80_L 89_E 0.87 0.00
199_N 164_L 0.87 0.00
68_R 71_M 0.86 0.00
97_K 107_R 0.86 0.00
220_G 68_M 0.86 0.00
181_F 121_G 0.86 0.00
68_R 192_C 0.86 0.00
71_L 63_V 0.86 0.00
204_A 194_V 0.86 0.00
26_D 177_V 0.86 0.00
90_F 49_S 0.85 0.00
154_I 88_F 0.85 0.00
190_N 192_C 0.85 0.00
92_C 82_A 0.85 0.00
91_C 62_R 0.85 0.00
190_N 70_R 0.84 0.00
190_N 72_R 0.84 0.00
222_A 146_E 0.84 0.00
199_N 81_L 0.84 0.00
161_D 123_V 0.84 0.00
173_A 68_M 0.84 0.00
27_P 14_G 0.84 0.00
34_A 60_F 0.83 0.00
56_R 51_V 0.83 0.00
241_A 105_G 0.83 0.00
205_A 166_G 0.83 0.00
128_I 109_E 0.83 0.00
219_I 137_L 0.83 0.00
196_T 222_K 0.83 0.00
190_N 102_K 0.83 0.00
202_A 22_L 0.82 0.00
142_K 119_L 0.82 0.00
204_A 209_R 0.82 0.00
217_A 164_L 0.82 0.00
28_V 102_K 0.82 0.00
35_E 37_N 0.82 0.00
69_M 164_L 0.82 0.00
172_L 115_T 0.82 0.00
180_T 89_E 0.82 0.00
152_I 62_R 0.81 0.00
68_R 74_T 0.81 0.00
217_A 72_R 0.81 0.00
151_F 135_L 0.81 0.00
77_E 180_R 0.81 0.00
90_F 164_L 0.81 0.00
223_V 120_I 0.81 0.00
136_A 177_V 0.81 0.00
73_M 159_R 0.81 0.00
110_A 194_V 0.80 0.00
227_L 196_G 0.80 0.00
239_L 217_E 0.80 0.00
154_I 111_I 0.80 0.00
165_D 134_K 0.80 0.00
154_I 218_Q 0.80 0.00
44_V 92_E 0.80 0.00
190_N 154_K 0.80 0.00
114_D 223_L 0.80 0.00
206_I 115_T 0.80 0.00
228_K 19_H 0.80 0.00
82_I 211_A 0.80 0.00
91_C 148_S 0.79 0.00
62_R 203_G 0.79 0.00
86_T 57_Y 0.79 0.00
67_T 192_C 0.79 0.00
13_I 20_Q 0.79 0.00
162_A 203_G 0.79 0.00
138_E 119_L 0.78 0.00
67_T 72_R 0.78 0.00
164_T 84_L 0.78 0.00
97_K 49_S 0.78 0.00
18_N 10_Q 0.78 0.00
93_L 69_S 0.78 0.00
199_N 30_R 0.78 0.00
199_N 192_C 0.78 0.00
129_Q 71_M 0.77 0.00
147_V 13_L 0.77 0.00
151_F 129_I 0.77 0.00
135_D 81_L 0.77 0.00
77_E 61_P 0.77 0.00
37_A 214_A 0.77 0.00
54_T 71_M 0.77 0.00
189_V 97_G 0.77 0.00
151_F 53_A 0.77 0.00
188_K 115_T 0.77 0.00
35_E 101_L 0.77 0.00
175_I 35_K 0.77 0.00
101_V 46_S 0.77 0.00
231_V 177_V 0.77 0.00
80_L 62_R 0.77 0.00
199_N 46_S 0.77 0.00
91_C 95_R 0.77 0.00
190_N 81_L 0.76 0.00
4_L 209_R 0.76 0.00
73_M 82_A 0.76 0.00
35_E 30_R 0.76 0.00
129_Q 98_P 0.76 0.00
34_A 83_E 0.76 0.00
26_D 51_V 0.76 0.00
227_L 14_G 0.76 0.00
179_A 201_V 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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