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OPENSEQ.org

ENGB - YJEE
UniProt: P0A6P7 - P0AF67
Length: 363
Sequences: 259
Seq/Len: 0.81
I_Prob: 0.00

ENGB - Probable GTP-binding protein EngB
Paralog alert: 0.95 [within 20: 0.76] - ratio of genomes with paralogs
Cluster includes: ENGB
YJEE - UPF0079 ATP-binding protein YjeE
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YJEE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2qagA:B:C:CContact Map
3r7wAC:BD:BD:ACContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
119_R 141_S 1.46 0.00
46_L 123_E 1.33 0.00
115_L 124_I 1.32 0.00
121_P 137_V 1.27 0.00
45_T 72_D 1.26 0.00
193_L 25_C 1.25 0.00
144_L 48_F 1.25 0.00
118_I 44_F 1.23 0.00
97_R 14_T 1.12 0.00
173_V 149_A 1.08 0.00
125_L 44_F 1.08 0.00
199_E 4_R 1.07 0.00
50_K 75_M 1.07 0.00
186_V 137_V 1.07 0.00
41_S 57_N 1.07 0.00
106_R 22_A 1.07 0.00
163_R 114_T 1.05 0.00
143_L 115_G 1.04 0.00
75_R 116_V 1.03 0.00
128_Q 20_R 1.03 0.00
184_Q 142_S 1.03 0.00
119_R 130_A 1.03 0.00
197_F 34_Y 1.00 0.00
113_V 111_Q 0.99 0.00
186_V 107_V 0.99 0.00
152_S 148_L 0.98 0.00
94_K 128_Y 0.98 0.00
106_R 52_L 0.98 0.00
73_G 15_L 0.98 0.00
46_L 57_N 0.97 0.00
106_R 63_Y 0.96 0.00
119_R 126_I 0.96 0.00
46_L 140_V 0.96 0.00
97_R 22_A 0.95 0.00
144_L 44_F 0.95 0.00
134_V 44_F 0.94 0.00
73_G 2_M 0.94 0.00
131_E 72_D 0.93 0.00
75_R 6_I 0.93 0.00
128_Q 145_E 0.93 0.00
128_Q 140_V 0.93 0.00
113_V 48_F 0.92 0.00
55_T 39_A 0.92 0.00
129_M 37_L 0.91 0.00
131_E 10_D 0.91 0.00
48_N 124_I 0.90 0.00
160_N 111_Q 0.90 0.00
25_T 141_S 0.90 0.00
175_V 149_A 0.90 0.00
193_L 143_A 0.90 0.00
186_V 104_I 0.90 0.00
186_V 119_D 0.89 0.00
118_I 30_V 0.89 0.00
142_V 44_F 0.89 0.00
27_I 106_L 0.89 0.00
29_V 4_R 0.88 0.00
24_D 103_A 0.88 0.00
116_M 52_L 0.88 0.00
27_I 36_D 0.88 0.00
123_K 44_F 0.88 0.00
75_R 49_L 0.87 0.00
196_W 111_Q 0.87 0.00
184_Q 136_R 0.87 0.00
118_I 103_A 0.87 0.00
133_A 97_D 0.87 0.00
97_R 128_Y 0.86 0.00
149_K 4_R 0.86 0.00
129_M 67_E 0.86 0.00
138_I 142_S 0.85 0.00
151_A 138_S 0.85 0.00
199_E 48_F 0.85 0.00
73_G 19_E 0.84 0.00
138_I 124_I 0.84 0.00
104_E 51_A 0.84 0.00
113_V 99_F 0.84 0.00
26_G 2_M 0.84 0.00
84_Y 92_F 0.83 0.00
118_I 39_A 0.83 0.00
43_L 67_E 0.83 0.00
86_E 110_P 0.83 0.00
126_D 63_Y 0.83 0.00
86_E 70_T 0.83 0.00
73_G 138_S 0.83 0.00
142_V 51_A 0.82 0.00
50_K 77_Y 0.82 0.00
188_K 77_Y 0.82 0.00
142_V 29_T 0.82 0.00
166_V 72_D 0.82 0.00
181_L 75_M 0.82 0.00
181_L 74_L 0.81 0.00
104_E 147_L 0.81 0.00
55_T 15_L 0.81 0.00
73_G 146_L 0.80 0.00
94_K 22_A 0.80 0.00
186_V 74_L 0.80 0.00
108_S 30_V 0.80 0.00
196_W 135_A 0.80 0.00
153_G 76_V 0.80 0.00
69_E 30_V 0.80 0.00
123_K 50_Q 0.80 0.00
110_Q 49_L 0.80 0.00
96_Q 110_P 0.80 0.00
196_W 20_R 0.80 0.00
166_V 45_S 0.80 0.00
178_F 20_R 0.79 0.00
97_R 8_L 0.79 0.00
110_Q 4_R 0.79 0.00
50_K 26_D 0.79 0.00
65_I 51_A 0.79 0.00
126_D 148_L 0.79 0.00
46_L 150_R 0.79 0.00
73_G 4_R 0.78 0.00
143_L 124_I 0.78 0.00
120_H 63_Y 0.78 0.00
199_E 150_R 0.78 0.00
29_V 107_V 0.78 0.00
48_N 119_D 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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