May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ENGB - PDXJ
UniProt: P0A6P7 - P0A794
Length: 453
Sequences: 299
Seq/Len: 0.73
I_Prob: 0.00

ENGB - Probable GTP-binding protein EngB
Paralog alert: 0.95 [within 20: 0.76] - ratio of genomes with paralogs
Cluster includes: ENGB
PDXJ - Pyridoxine 5'-phosphate synthase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PDXJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
147_A 178_A 1.22 0.00
115_L 13_I 1.15 0.00
136_S 206_I 1.13 0.00
181_L 154_I 1.12 0.00
199_E 99_Q 1.02 0.00
55_T 69_M 1.00 0.00
186_V 227_L 1.00 0.00
37_A 101_V 0.99 0.00
182_K 229_D 0.98 0.00
187_D 238_M 0.97 0.00
152_S 35_E 0.97 0.00
117_D 233_E 0.97 0.00
45_T 209_M 0.96 0.00
192_K 18_N 0.96 0.00
55_T 190_N 0.96 0.00
54_R 31_A 0.95 0.00
76_L 10_I 0.95 0.00
28_E 227_L 0.95 0.00
147_A 223_V 0.93 0.00
130_I 162_A 0.93 0.00
113_V 237_L 0.93 0.00
177_T 160_A 0.93 0.00
125_L 82_I 0.92 0.00
57_K 206_I 0.92 0.00
93_R 199_N 0.92 0.00
117_D 201_K 0.92 0.00
126_D 58_V 0.91 0.00
28_E 73_M 0.90 0.00
155_R 34_A 0.89 0.00
46_L 166_A 0.89 0.00
116_M 33_I 0.88 0.00
52_L 68_R 0.87 0.00
147_A 230_A 0.86 0.00
166_V 208_E 0.85 0.00
76_L 121_K 0.85 0.00
110_Q 120_C 0.85 0.00
181_L 209_M 0.84 0.00
129_M 44_V 0.84 0.00
159_L 71_L 0.84 0.00
31_F 69_M 0.83 0.00
183_K 41_G 0.83 0.00
53_A 97_K 0.83 0.00
187_D 66_D 0.83 0.00
169_F 116_M 0.83 0.00
196_W 114_D 0.82 0.00
57_K 75_V 0.82 0.00
150_L 126_A 0.82 0.00
53_A 182_A 0.81 0.00
108_S 40_D 0.81 0.00
65_I 82_I 0.81 0.00
181_L 236_R 0.81 0.00
174_Q 196_T 0.81 0.00
83_G 199_N 0.81 0.00
157_A 231_V 0.81 0.00
47_T 29_Q 0.81 0.00
52_L 54_T 0.80 0.00
157_A 58_V 0.79 0.00
133_A 10_I 0.79 0.00
193_L 185_L 0.79 0.00
135_D 173_A 0.79 0.00
46_L 188_K 0.78 0.00
66_N 189_V 0.78 0.00
56_S 175_I 0.78 0.00
108_S 41_G 0.78 0.00
112_L 152_I 0.78 0.00
186_V 207_P 0.77 0.00
59_P 26_D 0.77 0.00
53_A 143_A 0.77 0.00
173_V 115_K 0.77 0.00
176_E 116_M 0.77 0.00
82_Y 196_T 0.77 0.00
83_G 5_L 0.77 0.00
28_E 97_K 0.76 0.00
200_M 60_I 0.76 0.00
110_Q 151_F 0.76 0.00
147_A 221_R 0.76 0.00
29_V 116_M 0.75 0.00
113_V 239_L 0.75 0.00
139_A 132_L 0.75 0.00
165_A 121_K 0.75 0.00
64_L 135_D 0.75 0.00
108_S 221_R 0.75 0.00
191_Q 66_D 0.74 0.00
49_Q 135_D 0.74 0.00
117_D 229_D 0.74 0.00
115_L 235_K 0.74 0.00
52_L 18_N 0.74 0.00
77_V 13_I 0.74 0.00
117_D 90_F 0.74 0.00
177_T 199_N 0.74 0.00
151_A 231_V 0.73 0.00
29_V 176_A 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.7944 seconds.