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OPENSEQ.org

PNP - TRUB
UniProt: P05055 - P60340
Length: 1025
Sequences: 619
Seq/Len: 0.62
I_Prob: 0.00

PNP - Polyribonucleotide nucleotidyltransferase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PNP
TRUB - tRNA pseudouridine synthase B
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TRUB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
684_R 58_C 1.34 0.00
498_S 203_L 1.31 0.00
254_L 40_R 1.19 0.00
387_V 78_V 1.17 0.00
199_D 17_L 1.12 0.00
126_P 197_V 1.08 0.00
558_I 294_M 1.07 0.00
425_V 153_I 1.07 0.00
631_R 248_A 1.06 0.00
660_E 15_L 1.06 0.00
256_D 15_L 1.06 0.00
128_I 293_G 1.05 0.00
649_V 64_K 1.04 0.00
595_V 243_P 1.03 0.00
668_M 41_A 1.02 0.00
666_L 73_D 1.02 0.00
599_A 158_L 1.01 0.00
72_R 11_I 1.00 0.00
269_Q 59_L 1.00 0.00
469_V 241_L 1.00 0.00
385_Y 180_I 0.99 0.00
365_L 15_L 0.99 0.00
268_A 159_L 0.98 0.00
133_G 268_N 0.98 0.00
560_I 168_L 0.98 0.00
588_E 54_M 0.97 0.00
113_V 219_L 0.97 0.00
469_V 149_E 0.96 0.00
221_E 155_V 0.95 0.00
217_Q 15_L 0.95 0.00
666_L 72_S 0.94 0.00
655_A 144_I 0.94 0.00
78_F 201_R 0.93 0.00
557_T 196_H 0.93 0.00
654_I 72_S 0.93 0.00
620_E 243_P 0.93 0.00
12_G 52_T 0.93 0.00
216_I 289_G 0.93 0.00
386_S 184_I 0.93 0.00
595_V 207_K 0.92 0.00
215_V 11_I 0.92 0.00
333_V 95_I 0.92 0.00
567_D 108_L 0.92 0.00
589_I 20_P 0.91 0.00
107_F 72_S 0.91 0.00
616_T 125_M 0.91 0.00
78_F 18_D 0.90 0.00
407_A 51_A 0.90 0.00
326_G 124_S 0.90 0.00
161_Y 170_L 0.89 0.00
488_L 180_I 0.89 0.00
594_T 196_H 0.89 0.00
410_G 46_A 0.88 0.00
134_A 2_S 0.88 0.00
417_D 159_L 0.88 0.00
391_G 16_L 0.88 0.00
353_T 161_I 0.88 0.00
628_K 126_Y 0.88 0.00
194_Q 153_I 0.87 0.00
597_I 193_C 0.87 0.00
618_E 150_A 0.87 0.00
595_V 159_L 0.87 0.00
285_D 187_L 0.86 0.00
580_T 64_K 0.86 0.00
595_V 155_V 0.86 0.00
229_P 182_T 0.86 0.00
469_V 124_S 0.86 0.00
199_D 289_G 0.86 0.00
671_E 126_Y 0.85 0.00
195_L 206_S 0.85 0.00
631_R 65_F 0.85 0.00
337_T 32_V 0.85 0.00
511_I 88_T 0.85 0.00
589_I 64_K 0.85 0.00
268_A 204_A 0.85 0.00
19_E 294_M 0.84 0.00
334_L 32_V 0.84 0.00
568_V 137_Y 0.84 0.00
203_G 112_L 0.84 0.00
334_L 68_Y 0.84 0.00
256_D 107_Q 0.84 0.00
535_G 203_L 0.84 0.00
667_Q 195_A 0.83 0.00
385_Y 274_G 0.83 0.00
84_P 129_L 0.83 0.00
419_D 172_I 0.83 0.00
502_I 157_E 0.83 0.00
76_S 40_R 0.83 0.00
162_V 173_H 0.82 0.00
16_V 16_L 0.82 0.00
387_V 197_V 0.82 0.00
390_T 68_Y 0.82 0.00
268_A 40_R 0.82 0.00
246_V 294_M 0.82 0.00
24_A 293_G 0.82 0.00
422_P 197_V 0.82 0.00
132_I 293_G 0.82 0.00
18_L 135_K 0.82 0.00
92_A 195_A 0.81 0.00
117_V 40_R 0.81 0.00
169_E 256_L 0.81 0.00
423_Y 186_D 0.81 0.00
527_K 152_P 0.81 0.00
690_K 191_L 0.81 0.00
162_V 193_C 0.81 0.00
659_V 154_T 0.81 0.00
277_T 73_D 0.81 0.00
386_S 79_I 0.81 0.00
296_I 139_Y 0.80 0.00
158_N 280_L 0.80 0.00
606_K 114_T 0.80 0.00
327_L 31_K 0.80 0.00
255_S 180_I 0.80 0.00
176_D 92_D 0.80 0.00
102_L 60_G 0.80 0.00
219_I 293_G 0.80 0.00
186_V 193_C 0.80 0.00
639_V 294_M 0.80 0.00
29_A 210_V 0.80 0.00
275_S 146_V 0.80 0.00
22_M 16_L 0.79 0.00
678_E 65_F 0.79 0.00
446_A 33_K 0.79 0.00
44_V 219_L 0.79 0.00
376_F 17_L 0.79 0.00
592_D 122_I 0.79 0.00
378_F 72_S 0.79 0.00
120_V 67_Q 0.79 0.00
117_V 130_K 0.79 0.00
682_Q 148_R 0.79 0.00
501_G 124_S 0.78 0.00
571_K 293_G 0.78 0.00
222_L 7_R 0.78 0.00
450_L 96_V 0.78 0.00
211_Q 153_I 0.78 0.00
196_L 70_L 0.78 0.00
408_K 29_L 0.78 0.00
111_V 247_P 0.78 0.00
95_I 64_K 0.78 0.00
232_D 292_I 0.78 0.00
642_G 291_F 0.77 0.00
633_V 197_V 0.77 0.00
28_T 124_S 0.77 0.00
25_R 264_F 0.77 0.00
162_V 98_E 0.77 0.00
337_T 17_L 0.77 0.00
168_D 180_I 0.77 0.00
111_V 95_I 0.77 0.00
248_A 88_T 0.77 0.00
161_Y 87_D 0.77 0.00
279_A 116_R 0.76 0.00
79_R 208_Y 0.76 0.00
107_F 17_L 0.76 0.00
651_I 247_P 0.76 0.00
391_G 184_I 0.76 0.00
438_S 29_L 0.76 0.00
30_A 149_E 0.76 0.00
226_A 266_N 0.76 0.00
557_T 40_R 0.76 0.00
641_I 14_V 0.76 0.00
353_T 286_G 0.76 0.00
30_A 183_I 0.76 0.00
150_G 260_S 0.76 0.00
450_L 306_R 0.76 0.00
244_A 283_V 0.76 0.00
502_I 170_L 0.75 0.00
286_E 59_L 0.75 0.00
595_V 189_E 0.75 0.00
686_R 88_T 0.75 0.00
191_S 61_E 0.75 0.00
248_A 211_E 0.75 0.00
560_I 138_E 0.75 0.00
411_V 170_L 0.75 0.00
92_A 209_P 0.75 0.00
256_D 134_K 0.75 0.00
337_T 108_L 0.75 0.00
432_T 38_A 0.74 0.00
475_Y 214_V 0.74 0.00
477_V 40_R 0.74 0.00
149_I 107_Q 0.74 0.00
133_G 243_P 0.74 0.00
242_L 111_A 0.74 0.00
633_V 220_R 0.74 0.00
37_D 109_A 0.74 0.00
118_V 148_R 0.74 0.00
268_A 113_D 0.74 0.00
22_M 30_Q 0.74 0.00
301_E 51_A 0.74 0.00
305_V 270_V 0.74 0.00
232_D 296_E 0.74 0.00
313_E 153_I 0.73 0.00
397_K 175_S 0.73 0.00
211_Q 180_I 0.73 0.00
413_A 170_L 0.73 0.00
228_K 106_E 0.73 0.00
580_T 67_Q 0.73 0.00
595_V 162_R 0.73 0.00
529_A 188_G 0.73 0.00
420_K 159_L 0.73 0.00
254_L 276_P 0.73 0.00
286_E 104_S 0.73 0.00
52_P 295_G 0.73 0.00
22_M 139_Y 0.73 0.00
220_N 138_E 0.73 0.00
72_R 8_G 0.72 0.00
82_G 216_L 0.72 0.00
616_T 136_L 0.72 0.00
30_A 84_Q 0.72 0.00
140_L 40_R 0.72 0.00
600_T 36_Y 0.72 0.00
469_V 240_L 0.72 0.00
484_D 61_E 0.72 0.00
51_K 29_L 0.72 0.00
597_I 207_K 0.72 0.00
92_A 17_L 0.72 0.00
187_L 28_A 0.72 0.00
411_V 236_L 0.72 0.00
469_V 187_L 0.72 0.00
365_L 221_E 0.72 0.00
610_R 12_N 0.72 0.00
449_A 244_M 0.72 0.00
92_A 35_I 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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