| UniProt: | P77252 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13582 | ||
| Length: | 239 (238) | ||
| Sequences: | 3507 | ||
| Seq/Len: | 14.74 |
| YKGE
Paralog alert: 0.65 [within 20: 0.07] - ratio of genomes with paralogs Cluster includes: GLCF GLPC YKGE |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 131_R | 161_E | 3.983 | 1.00 | |
| 21_D | 234_E | 3.225 | 1.00 | |
| 131_R | 163_L | 3.113 | 1.00 | |
| 230_M | 238_S | 3.097 | 1.00 | |
| 24_L | 237_M | 3.048 | 1.00 | |
| 2_N | 32_R | 2.936 | 1.00 | |
| 41_C | 80_C | 2.733 | 1.00 | |
| 111_L | 233_A | 2.605 | 1.00 | |
| 116_V | 152_T | 2.562 | 1.00 | |
| 51_Y | 54_E | 2.546 | 1.00 | |
| 17_R | 234_E | 2.387 | 1.00 | |
| 136_P | 151_L | 2.312 | 1.00 | |
| 165_F | 197_L | 2.287 | 1.00 | |
| 11_G | 19_A | 2.245 | 1.00 | |
| 166_A | 199_E | 2.177 | 1.00 | |
| 67_E | 100_R | 2.166 | 1.00 | |
| 75_S | 81_T | 2.133 | 1.00 | |
| 22_S | 76_P | 2.083 | 1.00 | |
| 9_C | 41_C | 2.069 | 1.00 | |
| 85_K | 113_S | 2.05 | 1.00 | |
| 190_V | 219_R | 1.974 | 1.00 | |
| 133_V | 165_F | 1.919 | 1.00 | |
| 42_C | 80_C | 1.88 | 1.00 | |
| 151_L | 164_T | 1.866 | 1.00 | |
| 5_F | 76_P | 1.853 | 1.00 | |
| 206_I | 235_V | 1.8 | 1.00 | |
| 64_A | 97_W | 1.794 | 1.00 | |
| 31_C | 114_F | 1.774 | 1.00 | |
| 9_C | 80_C | 1.764 | 1.00 | |
| 132_A | 235_V | 1.74 | 1.00 | |
| 167_E | 196_H | 1.738 | 1.00 | |
| 18_M | 234_E | 1.733 | 1.00 | |
| 190_V | 215_N | 1.706 | 1.00 | |
| 3_V | 114_F | 1.703 | 1.00 | |
| 109_Q | 117_N | 1.701 | 1.00 | |
| 22_S | 111_L | 1.695 | 1.00 | |
| 152_T | 155_K | 1.694 | 1.00 | |
| 77_A | 209_D | 1.666 | 1.00 | |
| 47_I | 83_A | 1.631 | 1.00 | |
| 195_A | 223_E | 1.63 | 1.00 | |
| 60_K | 64_A | 1.615 | 1.00 | |
| 2_N | 34_N | 1.605 | 1.00 | |
| 109_Q | 113_S | 1.601 | 1.00 | |
| 132_A | 160_L | 1.574 | 1.00 | |
| 102_A | 106_A | 1.561 | 1.00 | |
| 131_R | 203_E | 1.507 | 1.00 | |
| 204_Y | 230_M | 1.501 | 1.00 | |
| 130_G | 203_E | 1.496 | 1.00 | |
| 23_V | 33_V | 1.468 | 1.00 | |
| 9_C | 42_C | 1.463 | 1.00 | |
| 59_M | 87_Y | 1.446 | 1.00 | |
| 44_Q | 79_S | 1.437 | 1.00 | |
| 40_G | 61_N | 1.38 | 0.99 | |
| 132_A | 206_I | 1.38 | 0.99 | |
| 112_T | 232_I | 1.374 | 0.99 | |
| 137_S | 207_G | 1.367 | 0.99 | |
| 230_M | 234_E | 1.362 | 0.99 | |
| 99_S | 103_K | 1.348 | 0.99 | |
| 8_T | 77_A | 1.317 | 0.99 | |
| 197_L | 205_L | 1.306 | 0.99 | |
| 73_I | 104_V | 1.294 | 0.99 | |
| 3_V | 33_V | 1.28 | 0.99 | |
| 129_Q | 161_E | 1.272 | 0.99 | |
| 23_V | 27_E | 1.27 | 0.99 | |
| 104_V | 108_M | 1.269 | 0.99 | |
| 208_A | 232_I | 1.259 | 0.99 | |
| 198_M | 225_Q | 1.259 | 0.99 | |
| 64_A | 100_R | 1.25 | 0.99 | |
| 230_M | 235_V | 1.242 | 0.98 | |
| 25_L | 236_L | 1.241 | 0.98 | |
| 195_A | 199_E | 1.234 | 0.98 | |
| 99_S | 102_A | 1.231 | 0.98 | |
| 56_I | 60_K | 1.226 | 0.98 | |
| 191_K | 195_A | 1.216 | 0.98 | |
| 190_V | 194_V | 1.208 | 0.98 | |
| 71_D | 107_R | 1.205 | 0.98 | |
| 44_Q | 48_N | 1.202 | 0.98 | |
| 172_C | 212_C | 1.187 | 0.98 | |
| 130_G | 204_Y | 1.181 | 0.98 | |
| 167_E | 192_E | 1.175 | 0.98 | |
| 109_Q | 114_F | 1.147 | 0.97 | |
| 117_N | 149_E | 1.145 | 0.97 | |
| 101_A | 105_A | 1.14 | 0.97 | |
| 28_K | 237_M | 1.14 | 0.97 | |
| 115_I | 236_L | 1.136 | 0.97 | |
| 64_A | 67_E | 1.129 | 0.97 | |
| 146_V | 149_E | 1.122 | 0.97 | |
| 133_V | 200_V | 1.117 | 0.96 | |
| 152_T | 156_N | 1.103 | 0.96 | |
| 155_K | 161_E | 1.1 | 0.96 | |
| 74_I | 114_F | 1.098 | 0.96 | |
| 81_T | 144_L | 1.098 | 0.96 | |
| 155_K | 162_L | 1.093 | 0.96 | |
| 134_Y | 150_P | 1.092 | 0.96 | |
| 93_D | 98_A | 1.086 | 0.96 | |
| 220_L | 225_Q | 1.084 | 0.96 | |
| 140_L | 146_V | 1.07 | 0.95 | |
| 154_L | 206_I | 1.067 | 0.95 | |
| 81_T | 108_M | 1.058 | 0.95 | |
| 141_A | 147_K | 1.055 | 0.95 | |
| 98_A | 102_A | 1.053 | 0.95 | |
| 197_L | 227_V | 1.049 | 0.94 | |
| 126_A | 157_V | 1.044 | 0.94 | |
| 26_L | 74_I | 1.041 | 0.94 | |
| 196_H | 199_E | 1.039 | 0.94 | |
| 75_S | 84_V | 1.037 | 0.94 | |
| 157_V | 160_L | 1.035 | 0.94 | |
| 4_N | 69_N | 1.025 | 0.93 | |
| 3_V | 74_I | 1.02 | 0.93 | |
| 205_L | 227_V | 1.019 | 0.93 | |
| 113_S | 146_V | 1.017 | 0.93 | |
| 194_V | 220_L | 1.017 | 0.93 | |
| 88_P | 105_A | 1.01 | 0.93 | |
| 34_N | 69_N | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3kwlA | 1 | 0.9289 | 100 | 0.261 | Contact Map | 0.544 |
| 3cf4A | 1 | 0.7741 | 99.9 | 0.548 | Contact Map | 0.088 |
| 3c8yA | 1 | 0.8912 | 97.6 | 0.859 | Contact Map | 0.115 |
| 2jfzA | 2 | 0.41 | 64.2 | 0.93 | Contact Map | 0.462 |
| 2gzmA | 4 | 0.4226 | 56.1 | 0.933 | Contact Map | 0.549 |
| 3outA | 3 | 0.4393 | 47.8 | 0.937 | Contact Map | 0.423 |
| 3qvlA | 2 | 0.841 | 45.6 | 0.938 | Contact Map | 0.394 |
| 1b73A | 1 | 0.41 | 44.4 | 0.938 | Contact Map | 0.526 |
| 1jflA | 2 | 0.8703 | 40.5 | 0.939 | Contact Map | 0.526 |
| 2eq5A | 4 | 0.4477 | 37.5 | 0.94 | Contact Map | 0.555 |
Sequence Conservation (Image Generated using WebLogo v3)