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OPENSEQ.org
YHAH - Inner membrane protein YhaH
UniProt: P64590 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12747
Length: 121 (119)
Sequences: 715
Seq/Len: 6.01
YHAH
Paralog alert: 0.51 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: YHAH YHAI YIIR
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
10_N 13_G 3.382 1.00
19_R 118_K 2.952 1.00
12_V 65_L 2.571 1.00
21_K 25_M 2.469 1.00
97_I 101_F 2.39 1.00
79_D 107_T 2.378 1.00
106_G 116_D 2.354 1.00
83_W 86_L 2.346 1.00
96_L 100_V 2.34 1.00
79_D 112_R 2.266 1.00
105_A 118_K 2.211 1.00
72_F 85_A 2.064 1.00
30_N 59_Y 2.023 1.00
14_F 69_A 2.022 1.00
4_Y 30_N 1.973 1.00
19_R 105_A 1.911 1.00
82_A 85_A 1.905 1.00
6_K 10_N 1.845 1.00
18_A 22_E 1.829 1.00
79_D 113_F 1.768 1.00
111_N 114_G 1.669 1.00
18_A 73_R 1.651 1.00
76_H 82_A 1.581 0.99
59_Y 63_V 1.529 0.99
7_V 26_F 1.514 0.99
1_M 5_L 1.491 0.99
75_L 98_I 1.436 0.99
109_G 116_D 1.406 0.98
4_Y 8_L 1.331 0.97
87_L 94_G 1.289 0.97
78_T 101_F 1.286 0.97
17_R 114_G 1.265 0.96
10_N 18_A 1.253 0.96
23_Y 102_N 1.241 0.96
14_F 68_W 1.237 0.95
26_F 70_V 1.197 0.94
71_Q 102_N 1.196 0.94
4_Y 59_Y 1.194 0.94
106_G 113_F 1.164 0.93
11_Y 14_F 1.154 0.93
105_A 116_D 1.149 0.92
87_L 98_I 1.149 0.92
95_W 99_I 1.149 0.92
99_I 103_C 1.148 0.92
3_W 21_K 1.135 0.92
29_V 33_F 1.11 0.91
107_T 116_D 1.095 0.90
23_Y 67_W 1.086 0.89
106_G 111_N 1.08 0.89
65_L 73_R 1.077 0.89
116_D 119_L 1.075 0.89
78_T 104_Q 1.07 0.88
24_W 78_T 1.068 0.88
13_G 73_R 1.068 0.88
32_I 36_V 1.052 0.87
7_V 70_V 1.048 0.87
35_F 42_K 1.035 0.86
80_R 101_F 1.023 0.85
11_Y 62_L 1.003 0.84
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3hd7B20.363610.60.932Contact Map0.519
2m8rA10.363610.60.932Contact Map0.292
3vowA20.33888.30.935Contact Map0.258
3v4kA20.33888.20.935Contact Map0.249
4j4jA20.33887.70.936Contact Map0.257
3rlfG10.98353.50.946Contact Map0.166
3pv9D20.82642.60.949Contact Map0.168
2ww9B10.46282.50.949Contact Map0.113
3bo0B10.46282.40.95Contact Map0.326
2qtsA60.39672.20.951Contact Map0.833
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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