May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

MDTF - Multidrug resistance protein MdtF
UniProt: P37637 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12241
Length: 1037 (1019)
Sequences: 7806
Seq/Len: 7.66

MDTF
Paralog alert: 0.74 [within 20: 0.28] - ratio of genomes with paralogs
Cluster includes: ACRB ACRD ACRF CUSA MDTB MDTC MDTF
GREMLIN Results:
  • No predictions exist for P37637
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4k0jA60.96621000.22Contact Map
3w9iA60.99611000.271Contact Map
4dx5A30.99521000.272Contact Map
3ne5A10.9731000.288Contact Map
3aqpA20.69141000.749Contact Map
2ew9A10.142752.70.985Contact Map
3cq1A10.094545.50.986Contact Map
2ropA10.168840.90.986Contact Map
1uwdA10.091638.80.986Contact Map
1p6tA10.145638.30.986Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.16 seconds.