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OPENSEQ.org
YCIG - Uncharacterized protein YciG
UniProt: P21361 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11127
Length: 59 (57)
Sequences: 79
Seq/Len: 1.39
YCIG
Paralog alert: 0.58 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YCIG YMDF
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
34_K 37_P 2.878 1.00
19_S 23_R 2.051 0.98
50_Q 54_N 1.921 0.97
11_F 21_A 1.812 0.95
23_R 39_R 1.685 0.92
8_S 13_E 1.544 0.87
3_E 17_K 1.532 0.86
27_Q 45_K 1.398 0.78
4_H 13_E 1.389 0.78
14_D 55_K 1.31 0.72
5_R 8_S 1.294 0.70
50_Q 56_S 1.278 0.69
33_F 40_A 1.259 0.67
28_H 38_Q 1.185 0.61
4_H 8_S 1.165 0.59
7_G 13_E 1.097 0.52
29_S 35_N 1.086 0.51
40_A 48_G 1.086 0.51
12_A 18_A 1.083 0.50
4_H 45_K 1.082 0.50
9_G 26_G 1.079 0.50
14_D 28_H 1.078 0.50
4_H 7_G 1.059 0.48
1_M 23_R 1.058 0.48
33_F 42_E 1.053 0.47
1_M 24_K 1.049 0.47
20_D 38_Q 1.046 0.47
14_D 19_S 1.041 0.46
38_Q 42_E 1.02 0.44
23_R 45_K 1.016 0.44
28_H 54_N 1.013 0.43
33_F 43_A 1.011 0.43
29_S 32_N 1.004 0.42
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1f15A30.42372.20.922Contact Map
1lajA30.35591.30.931Contact Map
4dpvZ10.69491.30.932Contact Map0
3zey910.3391.10.934Contact Map0
1mnnA10.32210.935Contact Map0
3p0sA10.98310.90.939Contact Map0
3sqwA10.88140.50.948Contact Map0
4jhdC20.3390.50.95Contact Map
3k9oB10.44070.40.95Contact Map
2wscE10.35590.40.951Contact Map0
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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