| UniProt: | P0AFT5 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12006 | ||
| Length: | 239 (237) | ||
| Sequences: | 3064 | ||
| Seq/Len: | 12.93 |
| YEHT
Paralog alert: 0.61 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: YEHT YPDB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 191_C | 223_V | 3.89 | 1.00 | |
| 14_R | 32_E | 3.635 | 1.00 | |
| 3_K | 28_E | 3.191 | 1.00 | |
| 183_E | 190_R | 3.181 | 1.00 | |
| 92_E | 107_R | 2.916 | 1.00 | |
| 18_R | 32_E | 2.889 | 1.00 | |
| 33_C | 42_A | 2.88 | 1.00 | |
| 7_V | 39_G | 2.743 | 1.00 | |
| 8_D | 57_M | 2.485 | 1.00 | |
| 61_S | 64_E | 2.471 | 1.00 | |
| 14_R | 34_S | 2.458 | 1.00 | |
| 67_G | 89_K | 2.275 | 1.00 | |
| 50_V | 115_L | 2.194 | 1.00 | |
| 5_L | 33_C | 2.185 | 1.00 | |
| 79_F | 95_A | 2.17 | 1.00 | |
| 139_C | 165_V | 2.067 | 1.00 | |
| 66_V | 79_F | 2.055 | 1.00 | |
| 35_N | 38_E | 1.982 | 1.00 | |
| 6_I | 18_R | 1.964 | 1.00 | |
| 18_R | 22_Q | 1.936 | 1.00 | |
| 36_A | 65_M | 1.931 | 1.00 | |
| 6_I | 14_R | 1.929 | 1.00 | |
| 226_S | 229_Y | 1.907 | 1.00 | |
| 80_L | 103_I | 1.855 | 1.00 | |
| 144_R | 204_E | 1.82 | 1.00 | |
| 189_L | 233_L | 1.814 | 1.00 | |
| 230_L | 234_K | 1.812 | 1.00 | |
| 156_V | 163_V | 1.797 | 1.00 | |
| 183_E | 196_L | 1.79 | 1.00 | |
| 78_V | 111_T | 1.764 | 1.00 | |
| 8_D | 14_R | 1.742 | 1.00 | |
| 36_A | 60_I | 1.719 | 1.00 | |
| 164_Y | 171_K | 1.641 | 1.00 | |
| 43_V | 48_P | 1.636 | 1.00 | |
| 149_Q | 152_D | 1.628 | 1.00 | |
| 16_N | 20_F | 1.624 | 1.00 | |
| 192_H | 195_Y | 1.601 | 1.00 | |
| 23_E | 105_E | 1.6 | 1.00 | |
| 66_V | 77_I | 1.578 | 1.00 | |
| 167_S | 172_E | 1.543 | 1.00 | |
| 56_Q | 83_F | 1.514 | 1.00 | |
| 94_H | 114_R | 1.507 | 1.00 | |
| 192_H | 224_P | 1.505 | 1.00 | |
| 214_E | 222_T | 1.497 | 1.00 | |
| 97_D | 107_R | 1.493 | 1.00 | |
| 10_E | 13_A | 1.477 | 1.00 | |
| 31_G | 42_A | 1.463 | 1.00 | |
| 197_V | 215_L | 1.453 | 1.00 | |
| 4_V | 27_I | 1.45 | 1.00 | |
| 42_A | 46_L | 1.443 | 1.00 | |
| 78_V | 115_L | 1.423 | 1.00 | |
| 51_L | 75_P | 1.419 | 1.00 | |
| 155_F | 223_V | 1.411 | 1.00 | |
| 34_S | 38_E | 1.393 | 0.99 | |
| 155_F | 195_Y | 1.389 | 0.99 | |
| 177_L | 181_T | 1.386 | 0.99 | |
| 97_D | 114_R | 1.386 | 0.99 | |
| 168_H | 201_H | 1.376 | 0.99 | |
| 154_A | 201_H | 1.366 | 0.99 | |
| 138_P | 147_L | 1.351 | 0.99 | |
| 206_R | 222_T | 1.347 | 0.99 | |
| 162_G | 174_F | 1.334 | 0.99 | |
| 26_D | 116_R | 1.33 | 0.99 | |
| 189_L | 199_L | 1.329 | 0.99 | |
| 40_I | 65_M | 1.328 | 0.99 | |
| 232_S | 236_A | 1.297 | 0.99 | |
| 83_F | 86_Y | 1.287 | 0.99 | |
| 63_L | 66_V | 1.285 | 0.99 | |
| 5_L | 48_P | 1.282 | 0.99 | |
| 195_Y | 223_V | 1.276 | 0.99 | |
| 43_V | 65_M | 1.27 | 0.99 | |
| 152_D | 168_H | 1.269 | 0.99 | |
| 40_I | 68_M | 1.266 | 0.99 | |
| 231_K | 235_E | 1.26 | 0.99 | |
| 205_I | 233_L | 1.25 | 0.99 | |
| 105_E | 109_E | 1.246 | 0.98 | |
| 97_D | 111_T | 1.236 | 0.98 | |
| 156_V | 182_L | 1.234 | 0.98 | |
| 153_V | 165_V | 1.231 | 0.98 | |
| 197_V | 202_L | 1.21 | 0.98 | |
| 191_C | 215_L | 1.201 | 0.98 | |
| 204_E | 216_I | 1.188 | 0.98 | |
| 108_L | 112_L | 1.18 | 0.98 | |
| 52_F | 78_V | 1.176 | 0.98 | |
| 4_V | 50_V | 1.176 | 0.98 | |
| 139_C | 148_L | 1.17 | 0.97 | |
| 9_D | 54_D | 1.167 | 0.97 | |
| 57_M | 60_I | 1.166 | 0.97 | |
| 159_R | 164_Y | 1.153 | 0.97 | |
| 31_G | 48_P | 1.153 | 0.97 | |
| 60_I | 68_M | 1.149 | 0.97 | |
| 189_L | 229_Y | 1.145 | 0.97 | |
| 155_F | 166_T | 1.14 | 0.97 | |
| 42_A | 48_P | 1.14 | 0.97 | |
| 178_T | 181_T | 1.138 | 0.97 | |
| 76_Y | 115_L | 1.137 | 0.97 | |
| 195_Y | 224_P | 1.132 | 0.97 | |
| 201_H | 218_R | 1.13 | 0.97 | |
| 157_S | 166_T | 1.13 | 0.97 | |
| 11_P | 15_E | 1.118 | 0.96 | |
| 52_F | 80_L | 1.116 | 0.96 | |
| 154_A | 219_N | 1.113 | 0.96 | |
| 79_F | 93_E | 1.103 | 0.96 | |
| 80_L | 99_L | 1.098 | 0.96 | |
| 96_F | 111_T | 1.094 | 0.96 | |
| 198_N | 201_H | 1.092 | 0.96 | |
| 136_F | 147_L | 1.091 | 0.96 | |
| 89_K | 92_E | 1.09 | 0.96 | |
| 186_T | 196_L | 1.08 | 0.95 | |
| 203_Q | 218_R | 1.08 | 0.95 | |
| 158_S | 193_R | 1.079 | 0.95 | |
| 64_E | 67_G | 1.078 | 0.95 | |
| 20_F | 105_E | 1.071 | 0.95 | |
| 66_V | 93_E | 1.071 | 0.95 | |
| 99_L | 108_L | 1.07 | 0.95 | |
| 16_N | 19_V | 1.069 | 0.95 | |
| 9_D | 101_K | 1.063 | 0.95 | |
| 92_E | 110_K | 1.057 | 0.95 | |
| 63_L | 93_E | 1.054 | 0.95 | |
| 158_S | 161_S | 1.053 | 0.95 | |
| 232_S | 235_E | 1.052 | 0.95 | |
| 216_I | 222_T | 1.05 | 0.94 | |
| 152_D | 169_E | 1.047 | 0.94 | |
| 155_F | 221_L | 1.045 | 0.94 | |
| 103_I | 108_L | 1.041 | 0.94 | |
| 163_V | 177_L | 1.035 | 0.94 | |
| 144_R | 206_R | 1.028 | 0.94 | |
| 53_L | 66_V | 1.019 | 0.93 | |
| 109_E | 113_A | 1.011 | 0.93 | |
| 56_Q | 61_S | 1.007 | 0.93 | |
| 157_S | 195_Y | 1.005 | 0.93 | |
| 39_G | 65_M | 1.003 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1kgsA | 1 | 0.9079 | 99.9 | 0.574 | Contact Map | 0.693 |
| 3d6wA | 2 | 0.4435 | 99.9 | 0.58 | Contact Map | 0.843 |
| 3n0rA | 1 | 0.5272 | 99.8 | 0.596 | Contact Map | 0.594 |
| 4g4kA | 2 | 0.4184 | 99.8 | 0.612 | Contact Map | 0.819 |
| 4hyeA | 2 | 0.7992 | 99.8 | 0.616 | Contact Map | 0.797 |
| 4l4uA | 1 | 0.9623 | 99.8 | 0.617 | Contact Map | 0.675 |
| 1ny5A | 2 | 0.954 | 99.8 | 0.618 | Contact Map | 0.688 |
| 2a9oA | 1 | 0.4937 | 99.8 | 0.626 | Contact Map | 0.761 |
| 3dzdA | 2 | 0.9456 | 99.8 | 0.626 | Contact Map | 0.734 |
| 1dz3A | 1 | 0.523 | 99.8 | 0.628 | Contact Map | 0.592 |
Sequence Conservation (Image Generated using WebLogo v3)