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OPENSEQ.org
RODA - Rod shape-determining protein RodA
UniProt: P0ABG7 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10607
Length: 370 (351)
Sequences: 3845
Seq/Len: 10.95
RODA
Paralog alert: 0.89 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: FTSW RODA
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
291_G 311_M 3.867 1.00
17_D 290_R 3.645 1.00
291_G 356_V 3.349 1.00
307_A 356_V 3.192 1.00
104_D 107_I 2.946 1.00
68_P 303_G 2.827 1.00
220_D 223_G 2.697 1.00
172_F 312_L 2.519 1.00
269_A 277_I 2.476 1.00
235_I 269_A 2.453 1.00
23_I 287_L 2.39 1.00
216_D 219_S 2.383 1.00
28_L 53_I 2.381 1.00
23_I 286_L 2.372 1.00
56_G 350_M 2.345 1.00
310_L 356_V 2.304 1.00
258_E 261_T 2.258 1.00
82_C 119_A 2.247 1.00
95_I 100_Q 2.2 1.00
24_L 353_F 2.16 1.00
63_M 351_A 2.13 1.00
323_G 329_L 2.084 1.00
245_W 272_L 2.033 1.00
165_L 334_V 1.977 1.00
176_L 308_G 1.974 1.00
82_C 116_A 1.974 1.00
78_L 119_A 1.974 1.00
268_L 280_L 1.971 1.00
122_L 306_M 1.968 1.00
173_V 309_G 1.959 1.00
338_L 349_L 1.932 1.00
338_L 353_F 1.926 1.00
88_A 92_F 1.919 1.00
265_F 277_I 1.912 1.00
324_M 331_V 1.911 1.00
303_G 359_I 1.894 1.00
34_V 268_L 1.83 1.00
151_T 163_S 1.83 1.00
60_M 357_M 1.813 1.00
281_L 322_I 1.806 1.00
248_G 267_V 1.79 1.00
72_E 302_F 1.784 1.00
34_V 272_L 1.772 1.00
32_A 46_M 1.771 1.00
230_Q 250_Q 1.762 1.00
80_I 84_I 1.726 1.00
318_V 322_I 1.726 1.00
241_R 275_V 1.725 1.00
278_L 282_A 1.723 1.00
121_P 309_G 1.718 1.00
101_R 113_S 1.672 1.00
113_S 162_T 1.668 1.00
291_G 307_A 1.631 1.00
298_A 359_I 1.616 1.00
265_F 322_I 1.609 1.00
87_V 91_A 1.601 1.00
288_I 315_F 1.592 1.00
152_L 156_A 1.588 1.00
218_E 229_I 1.579 1.00
307_A 359_I 1.576 1.00
169_S 313_I 1.549 1.00
228_I 331_V 1.539 1.00
268_L 339_V 1.529 1.00
27_L 339_V 1.527 1.00
97_K 258_E 1.504 1.00
50_I 54_A 1.498 1.00
147_I 170_G 1.491 1.00
120_V 166_V 1.467 1.00
38_A 267_V 1.451 1.00
233_I 250_Q 1.438 1.00
30_Y 268_L 1.434 1.00
104_D 109_R 1.429 1.00
358_S 362_H 1.428 1.00
20_M 287_L 1.423 1.00
37_S 271_E 1.42 1.00
68_P 358_S 1.411 1.00
27_L 280_L 1.403 0.99
136_S 139_N 1.397 0.99
274_L 278_L 1.38 0.99
44_G 48_R 1.38 0.99
34_V 264_I 1.378 0.99
89_V 112_P 1.364 0.99
356_V 359_I 1.361 0.99
30_Y 280_L 1.358 0.99
231_S 325_V 1.351 0.99
173_V 305_V 1.348 0.99
121_P 169_S 1.347 0.99
52_Q 343_G 1.347 0.99
32_A 50_I 1.346 0.99
23_I 283_L 1.344 0.99
28_L 350_M 1.342 0.99
59_I 351_A 1.331 0.99
84_I 88_A 1.319 0.99
30_Y 283_L 1.317 0.99
293_W 297_R 1.317 0.99
306_M 359_I 1.312 0.99
64_A 354_G 1.304 0.99
110_F 115_I 1.304 0.99
74_W 77_Y 1.292 0.99
20_M 294_I 1.286 0.99
54_A 58_V 1.279 0.99
288_I 311_M 1.277 0.99
263_F 331_V 1.274 0.99
335_P 345_A 1.271 0.99
240_L 275_V 1.26 0.99
68_P 300_T 1.237 0.98
71_Y 355_I 1.237 0.98
261_T 341_Y 1.233 0.98
288_I 318_V 1.232 0.98
311_M 356_V 1.229 0.98
281_L 318_V 1.229 0.98
32_A 49_K 1.221 0.98
60_M 354_G 1.219 0.98
86_L 116_A 1.215 0.98
240_L 274_L 1.215 0.98
264_I 268_L 1.212 0.98
128_I 173_V 1.209 0.98
44_G 47_E 1.208 0.98
162_T 335_P 1.206 0.98
231_S 266_A 1.201 0.98
24_L 350_M 1.201 0.98
86_L 89_V 1.2 0.98
62_V 66_I 1.198 0.98
204_H 207_Q 1.188 0.98
114_E 117_K 1.185 0.98
205_D 208_R 1.182 0.98
243_K 249_T 1.178 0.98
310_L 352_G 1.177 0.98
256_L 266_A 1.175 0.98
209_Q 224_A 1.17 0.97
284_Y 318_V 1.168 0.97
221_P 229_I 1.166 0.97
124_V 170_G 1.157 0.97
148_F 152_L 1.156 0.97
68_P 359_I 1.155 0.97
180_S 183_L 1.149 0.97
161_G 332_V 1.139 0.97
336_L 339_V 1.138 0.97
88_A 103_L 1.138 0.97
217_P 225_G 1.132 0.97
300_T 303_G 1.131 0.97
295_A 307_A 1.13 0.97
294_I 307_A 1.124 0.97
64_A 358_S 1.124 0.97
125_A 173_V 1.117 0.96
121_P 173_V 1.117 0.96
53_I 346_L 1.112 0.96
228_I 327_G 1.111 0.96
94_A 104_D 1.109 0.96
45_M 260_H 1.107 0.96
89_V 103_L 1.106 0.96
36_W 46_M 1.106 0.96
213_M 224_A 1.106 0.96
317_Y 335_P 1.103 0.96
155_A 163_S 1.102 0.96
59_I 347_I 1.101 0.96
168_L 316_V 1.101 0.96
313_I 352_G 1.099 0.96
41_Q 47_E 1.098 0.96
277_I 326_S 1.097 0.96
322_I 326_S 1.092 0.96
161_G 324_M 1.085 0.96
237_S 243_K 1.085 0.96
33_L 245_W 1.085 0.96
83_I 87_V 1.081 0.95
88_A 91_A 1.076 0.95
47_E 50_I 1.063 0.95
77_Y 81_I 1.058 0.95
49_K 52_Q 1.057 0.95
220_D 225_G 1.053 0.95
248_G 271_E 1.051 0.94
70_V 74_W 1.051 0.94
115_I 348_V 1.046 0.94
280_L 339_V 1.044 0.94
176_L 312_L 1.043 0.94
355_I 359_I 1.037 0.94
218_E 232_K 1.033 0.94
47_E 51_G 1.031 0.94
75_A 302_F 1.029 0.94
231_S 263_F 1.025 0.93
45_M 341_Y 1.024 0.93
220_D 224_A 1.021 0.93
354_G 358_S 1.018 0.93
101_R 161_G 1.018 0.93
19_T 286_L 1.017 0.93
58_V 62_V 1.014 0.93
295_A 308_G 1.01 0.93
120_V 147_I 1.006 0.93
57_L 61_V 1.004 0.93
126_R 130_R 1.001 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2k9jB10.11356.60.976Contact Map0.26
4f4sA100.16764.70.978Contact Map0.219
1v5mA10.10814.40.978Contact Map0.133
3arcZ20.13514.20.979Contact Map0.008
2xndJ80.15683.60.979Contact Map0
3arcL20.09732.70.98Contact Map0.256
2l9jA10.11082.60.981Contact Map0
4i7zE10.08652.60.981Contact Map0.233
4h44E10.08382.50.981Contact Map0.176
2wwbB10.12161.80.982Contact Map0.149
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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