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OPENSEQ.org
YBDD - Uncharacterized protein YbdD
UniProt: P0AAS9 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11107
Length: 65 (65)
Sequences: 165
Seq/Len: 2.54
YBDD
Paralog alert: 0.54 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBDD YJIX
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
43_T 46_E 2.971 1.00
49_R 55_R 1.806 0.99
5_L 8_A 1.741 0.98
48_F 52_Q 1.718 0.98
11_Y 14_Q 1.643 0.97
30_E 34_V 1.616 0.97
42_M 51_R 1.606 0.96
17_K 20_I 1.456 0.93
23_P 56_Y 1.4 0.91
35_N 41_P 1.348 0.89
22_M 33_R 1.323 0.87
33_R 39_Q 1.267 0.84
15_A 18_L 1.242 0.82
23_P 51_R 1.234 0.82
30_E 33_R 1.229 0.81
3_D 6_A 1.226 0.81
20_I 27_N 1.185 0.78
31_H 36_H 1.144 0.75
51_R 57_G 1.125 0.73
10_K 16_A 1.095 0.70
31_H 47_F 1.094 0.70
38_D 43_T 1.072 0.67
39_Q 63_R 1.068 0.67
52_Q 59_K 1.06 0.66
37_P 54_A 1.059 0.66
22_M 53_D 1.057 0.66
49_R 57_G 1.042 0.64
51_R 58_G 1.04 0.64
46_E 60_G 1.039 0.64
2_F 13_G 1.037 0.64
26_D 44_Y 1.037 0.64
23_P 37_P 1.017 0.61
16_A 51_R 1.015 0.61
1_M 29_V 1.013 0.61
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2iw0A10.5385130.911Contact Map0.056
3tg2A10.5538120.912Contact Map0.698
1tq5A10.553810.50.914Contact Map0.003
3hkmA30.55388.80.917Contact Map0.455
2im9A10.90776.10.923Contact Map0.191
1t98A20.49235.90.924Contact Map0.767
4k36A20.53855.90.924Contact Map0.567
2bbrA10.52314.90.927Contact Map0.282
3i2wA20.72314.50.928Contact Map0.081
1xdyA100.55384.40.928Contact Map0.864
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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