May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YEBZ - YOBA
UniProt: P76278 - P0AA57
Length: 414
Sequences: 287
Seq/Len: 0.71
I_Prob: 0.43

YEBZ - Inner membrane protein YebZ
Paralog alert: 0.18 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YEBZ
YOBA - Protein YobA
Paralog alert: 0.17 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YOBA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
210_L 96_L 1.97 0.43
285_A 112_G 1.68 0.23
245_R 54_E 1.51 0.15
208_N 44_A 1.49 0.14
100_L 107_V 1.48 0.14
244_N 60_F 1.46 0.13
194_G 107_V 1.45 0.12
244_N 105_W 1.41 0.11
125_A 102_T 1.31 0.08
96_W 50_L 1.26 0.07
239_V 39_A 1.25 0.06
116_P 42_T 1.24 0.06
194_G 28_A 1.24 0.06
198_V 117_G 1.22 0.06
49_H 19_L 1.22 0.06
258_R 19_L 1.20 0.05
274_G 33_Q 1.19 0.05
189_R 109_S 1.17 0.05
167_P 33_Q 1.17 0.05
14_F 115_T 1.15 0.04
234_V 57_E 1.14 0.04
221_T 15_L 1.13 0.04
59_T 42_T 1.13 0.04
151_H 56_V 1.12 0.04
209_A 112_G 1.11 0.04
197_A 65_I 1.11 0.04
10_R 28_A 1.11 0.04
245_R 30_L 1.08 0.04
123_T 65_I 1.08 0.03
203_A 92_L 1.07 0.03
198_V 28_A 1.07 0.03
266_M 107_V 1.07 0.03
237_M 60_F 1.07 0.03
245_R 88_L 1.06 0.03
245_R 107_V 1.06 0.03
70_G 56_V 1.06 0.03
157_C 80_R 1.06 0.03
99_V 107_V 1.06 0.03
255_D 39_A 1.05 0.03
279_V 20_V 1.05 0.03
21_F 108_V 1.05 0.03
231_A 109_S 1.04 0.03
282_S 37_A 1.04 0.03
53_W 65_I 1.04 0.03
282_S 106_H 1.04 0.03
277_V 115_T 1.04 0.03
226_L 30_L 1.04 0.03
221_T 108_V 1.04 0.03
94_W 60_F 1.03 0.03
206_V 39_A 1.03 0.03
55_L 95_S 1.02 0.03
10_R 60_F 1.02 0.03
242_L 33_Q 1.02 0.03
176_K 98_P 1.01 0.03
201_V 59_G 1.01 0.03
275_A 46_Q 1.01 0.03
191_S 88_L 1.00 0.03
14_F 109_S 1.00 0.03
248_L 105_W 1.00 0.03
208_N 60_F 1.00 0.03
81_I 124_K 1.00 0.03
246_Y 61_S 1.00 0.03
114_N 65_I 0.99 0.03
159_A 49_T 0.99 0.02
283_L 68_P 0.98 0.02
10_R 54_E 0.98 0.02
236_I 51_N 0.98 0.02
119_L 41_V 0.98 0.02
191_S 57_E 0.98 0.02
274_G 28_A 0.98 0.02
124_T 25_W 0.98 0.02
56_I 65_I 0.97 0.02
14_F 105_W 0.96 0.02
129_L 55_G 0.96 0.02
10_R 99_G 0.96 0.02
95_L 120_T 0.96 0.02
277_V 25_W 0.95 0.02
210_L 70_N 0.95 0.02
6_W 63_A 0.95 0.02
182_Q 39_A 0.95 0.02
29_W 28_A 0.95 0.02
182_Q 103_V 0.94 0.02
153_I 25_W 0.94 0.02
13_H 28_A 0.94 0.02
45_R 19_L 0.94 0.02
45_R 98_P 0.94 0.02
150_N 28_A 0.94 0.02
214_G 61_S 0.93 0.02
51_A 84_D 0.93 0.02
30_L 117_G 0.93 0.02
140_E 38_N 0.93 0.02
222_Y 20_V 0.93 0.02
204_S 30_L 0.93 0.02
11_F 100_T 0.92 0.02
286_T 64_K 0.92 0.02
63_A 67_G 0.92 0.02
123_T 63_A 0.92 0.02
88_T 124_K 0.91 0.02
123_T 43_A 0.91 0.02
188_M 109_S 0.91 0.02
290_F 17_T 0.91 0.02
126_Q 56_V 0.91 0.02
237_M 28_A 0.91 0.02
240_I 99_G 0.90 0.02
110_M 88_L 0.90 0.02
160_A 21_T 0.90 0.02
259_A 49_T 0.90 0.02
131_A 33_Q 0.90 0.02
245_R 60_F 0.90 0.02
155_L 63_A 0.90 0.02
159_A 66_T 0.89 0.02
147_H 108_V 0.89 0.02
71_T 48_I 0.89 0.02
212_I 124_K 0.89 0.02
20_V 18_S 0.89 0.02
162_F 24_V 0.89 0.02
246_Y 124_K 0.89 0.02
140_E 48_I 0.89 0.02
58_A 112_G 0.89 0.02
244_N 61_S 0.88 0.01
146_I 117_G 0.88 0.01
234_V 114_K 0.88 0.01
50_A 86_K 0.88 0.01
246_Y 105_W 0.88 0.01
203_A 32_H 0.88 0.01
284_L 46_Q 0.88 0.01
277_V 61_S 0.88 0.01
181_H 69_K 0.88 0.01
49_H 40_Q 0.88 0.01
250_P 103_V 0.88 0.01
19_L 43_A 0.88 0.01
95_L 41_V 0.87 0.01
182_Q 40_Q 0.87 0.01
234_V 63_A 0.87 0.01
150_N 119_Y 0.87 0.01
94_W 119_Y 0.87 0.01
217_P 92_L 0.87 0.01
243_A 19_L 0.87 0.01
159_A 48_I 0.86 0.01
103_V 100_T 0.86 0.01
116_P 25_W 0.86 0.01
186_A 84_D 0.86 0.01
21_F 53_S 0.86 0.01
227_L 60_F 0.86 0.01
199_I 100_T 0.86 0.01
289_P 37_A 0.85 0.01
51_A 90_V 0.85 0.01
66_G 48_I 0.85 0.01
246_Y 60_F 0.85 0.01
225_Q 117_G 0.85 0.01
203_A 42_T 0.85 0.01
110_M 44_A 0.85 0.01
273_I 120_T 0.85 0.01
243_A 15_L 0.84 0.01
66_G 91_P 0.84 0.01
130_L 108_V 0.84 0.01
54_S 43_A 0.84 0.01
57_S 48_I 0.84 0.01
106_I 41_V 0.84 0.01
6_W 39_A 0.84 0.01
280_I 25_W 0.84 0.01
258_R 39_A 0.84 0.01
172_M 58_T 0.84 0.01
231_A 120_T 0.84 0.01
146_I 40_Q 0.84 0.01
97_Q 33_Q 0.84 0.01
142_V 97_K 0.83 0.01
66_G 76_L 0.83 0.01
202_L 24_V 0.83 0.01
255_D 18_S 0.83 0.01
194_G 114_K 0.83 0.01
49_H 33_Q 0.83 0.01
138_L 31_T 0.83 0.01
83_Q 56_V 0.83 0.01
236_I 103_V 0.83 0.01
5_T 38_N 0.83 0.01
130_L 96_L 0.83 0.01
167_P 116_K 0.82 0.01
280_I 54_E 0.82 0.01
206_V 91_P 0.82 0.01
216_P 34_Y 0.82 0.01
156_I 46_Q 0.82 0.01
81_I 20_V 0.82 0.01
290_F 66_T 0.82 0.01
190_F 107_V 0.82 0.01
272_A 119_Y 0.82 0.01
132_G 102_T 0.82 0.01
186_A 40_Q 0.82 0.01
188_M 110_V 0.82 0.01
76_V 44_A 0.82 0.01
115_M 95_S 0.82 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0421 seconds.