| UniProt: | P0AA57 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14029 | ||
| Length: | 124 (110) | ||
| Sequences: | 666 | ||
| Seq/Len: | 6.05 |
| YOBA
Paralog alert: 0.17 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 30_L | 50_L | 4.02 | 1.00 | |
| 103_V | 119_Y | 2.785 | 1.00 | |
| 28_A | 54_E | 2.759 | 1.00 | |
| 62_G | 106_H | 2.44 | 1.00 | |
| 106_H | 114_K | 2.292 | 1.00 | |
| 33_Q | 119_Y | 2.237 | 1.00 | |
| 28_A | 110_V | 2.163 | 1.00 | |
| 40_Q | 122_S | 1.862 | 1.00 | |
| 100_T | 122_S | 1.802 | 1.00 | |
| 28_A | 53_S | 1.591 | 0.99 | |
| 51_N | 87_Q | 1.57 | 0.99 | |
| 17_T | 20_V | 1.554 | 0.99 | |
| 68_P | 99_G | 1.523 | 0.99 | |
| 31_T | 53_S | 1.518 | 0.99 | |
| 48_I | 65_I | 1.507 | 0.99 | |
| 105_W | 117_G | 1.503 | 0.99 | |
| 34_Y | 47_A | 1.465 | 0.99 | |
| 41_V | 45_P | 1.441 | 0.99 | |
| 57_E | 60_F | 1.405 | 0.98 | |
| 56_V | 107_V | 1.313 | 0.97 | |
| 100_T | 120_T | 1.31 | 0.97 | |
| 109_S | 114_K | 1.287 | 0.97 | |
| 63_A | 90_V | 1.286 | 0.97 | |
| 53_S | 110_V | 1.274 | 0.96 | |
| 27_H | 113_H | 1.257 | 0.96 | |
| 61_S | 105_W | 1.257 | 0.96 | |
| 43_A | 77_P | 1.248 | 0.96 | |
| 28_A | 109_S | 1.229 | 0.95 | |
| 96_L | 121_F | 1.189 | 0.94 | |
| 48_I | 114_K | 1.173 | 0.94 | |
| 106_H | 109_S | 1.171 | 0.93 | |
| 48_I | 73_I | 1.151 | 0.93 | |
| 88_L | 107_V | 1.148 | 0.93 | |
| 44_A | 123_V | 1.125 | 0.92 | |
| 15_L | 19_L | 1.115 | 0.91 | |
| 108_V | 115_T | 1.106 | 0.91 | |
| 29_H | 53_S | 1.105 | 0.91 | |
| 63_A | 96_L | 1.095 | 0.90 | |
| 105_W | 115_T | 1.091 | 0.90 | |
| 76_L | 101_Y | 1.085 | 0.89 | |
| 60_F | 109_S | 1.077 | 0.89 | |
| 32_H | 51_N | 1.074 | 0.89 | |
| 62_G | 102_T | 1.068 | 0.88 | |
| 37_A | 119_Y | 1.061 | 0.88 | |
| 38_N | 119_Y | 1.06 | 0.88 | |
| 30_L | 33_Q | 1.059 | 0.88 | |
| 54_E | 110_V | 1.045 | 0.87 | |
| 65_I | 103_V | 1.044 | 0.87 | |
| 64_K | 105_W | 1.041 | 0.87 | |
| 21_T | 42_T | 1.024 | 0.85 | |
| 110_V | 116_K | 1.008 | 0.84 | |
| 29_H | 115_T | 1.001 | 0.84 | |
| 106_H | 115_T | 1 | 0.84 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1lyqA | 2 | 0.7903 | 100 | 0.218 | Contact Map | 0.624 |
| 2c9rA | 1 | 0.7823 | 100 | 0.231 | Contact Map | 0.579 |
| 4hu2A | 1 | 0.75 | 94.9 | 0.828 | Contact Map | 0.385 |
| 3vynA | 2 | 0.75 | 94.9 | 0.829 | Contact Map | 0.375 |
| 3c12A | 1 | 0.7177 | 91.7 | 0.848 | Contact Map | 0.081 |
| 3isyA | 1 | 0.8548 | 91.7 | 0.848 | Contact Map | 0.334 |
| 3osvA | 4 | 0.6935 | 89.5 | 0.856 | Contact Map | 0.041 |
| 3pddA | 1 | 0.6935 | 87.1 | 0.862 | Contact Map | 0.304 |
| 2vtcA | 2 | 0.9435 | 85.3 | 0.865 | Contact Map | 0.268 |
| 3m7oA | 4 | 0.9274 | 77.3 | 0.876 | Contact Map | 0.185 |
Sequence Conservation (Image Generated using WebLogo v3)