May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YDBL - YNBE
UniProt: P76076 - P64448
Length: 169
Sequences: 113
Seq/Len: 0.69
I_Prob: 0.04

YDBL - Uncharacterized protein YdbL
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YDBL
YNBE - Uncharacterized protein YnbE
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YNBE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_L 8_L 1.72 0.04
41_L 60_L 1.54 0.02
88_V 34_M 1.48 0.02
54_V 23_V 1.47 0.02
11_L 12_F 1.35 0.01
97_V 25_A 1.33 0.01
10_F 12_F 1.26 0.01
42_V 34_M 1.24 0.01
46_T 28_E 1.22 0.01
91_A 54_L 1.20 0.01
86_K 47_D 1.20 0.01
90_R 54_L 1.19 0.01
98_Q 49_D 1.18 0.01
46_T 27_K 1.17 0.01
78_D 39_E 1.16 0.01
89_A 16_G 1.16 0.01
97_V 34_M 1.15 0.01
18_N 5_L 1.14 0.01
83_A 48_K 1.14 0.01
85_Q 22_E 1.13 0.01
9_A 13_M 1.12 0.01
64_S 25_A 1.12 0.01
76_V 18_T 1.11 0.01
83_A 36_V 1.11 0.01
13_G 9_T 1.11 0.01
76_V 16_G 1.11 0.01
25_D 28_E 1.09 0.01
2_K 26_P 1.06 0.01
80_A 21_I 1.05 0.01
66_Q 49_D 1.05 0.01
107_K 60_L 1.04 0.01
92_K 27_K 1.04 0.01
68_L 28_E 1.03 0.01
87_L 38_I 1.03 0.01
87_L 20_R 1.03 0.01
53_L 38_I 1.03 0.01
57_I 58_S 1.03 0.01
38_Y 44_I 1.02 0.01
101_N 54_L 0.99 0.01
54_V 31_T 0.99 0.01
86_K 40_H 0.98 0.01
36_T 50_V 0.98 0.01
59_A 45_K 0.96 0.00
86_K 42_I 0.95 0.00
74_V 10_S 0.95 0.00
93_P 23_V 0.95 0.00
100_I 34_M 0.94 0.00
33_V 27_K 0.93 0.00
6_L 11_S 0.93 0.00
20_M 10_S 0.93 0.00
21_A 42_I 0.93 0.00
107_K 45_K 0.92 0.00
11_L 7_A 0.92 0.00
96_Y 36_V 0.92 0.00
82_L 44_I 0.92 0.00
74_V 46_A 0.91 0.00
90_R 16_G 0.91 0.00
89_A 21_I 0.90 0.00
80_A 36_V 0.89 0.00
91_A 55_E 0.89 0.00
48_A 9_T 0.89 0.00
17_S 9_T 0.88 0.00
95_E 55_E 0.87 0.00
91_A 57_R 0.87 0.00
91_A 50_V 0.86 0.00
11_L 15_V 0.86 0.00
28_R 57_R 0.86 0.00
38_Y 15_V 0.86 0.00
16_S 14_L 0.86 0.00
20_M 23_V 0.86 0.00
30_Q 11_S 0.85 0.00
19_V 13_M 0.85 0.00
28_R 25_A 0.84 0.00
38_Y 23_V 0.84 0.00
60_E 59_D 0.84 0.00
42_V 57_R 0.83 0.00
60_E 24_A 0.83 0.00
87_L 34_M 0.83 0.00
95_E 34_M 0.83 0.00
50_T 31_T 0.83 0.00
59_A 27_K 0.83 0.00
88_V 39_E 0.83 0.00
84_G 36_V 0.83 0.00
56_D 39_E 0.82 0.00
87_L 50_V 0.82 0.00
5_L 11_S 0.82 0.00
15_V 10_S 0.82 0.00
6_L 7_A 0.81 0.00
57_I 6_A 0.81 0.00
88_V 55_E 0.81 0.00
55_A 7_A 0.81 0.00
18_N 43_I 0.80 0.00
23_T 22_E 0.80 0.00
23_T 20_R 0.80 0.00
90_R 23_V 0.80 0.00
85_Q 49_D 0.80 0.00
79_I 60_L 0.80 0.00
24_L 33_N 0.79 0.00
79_I 46_A 0.79 0.00
55_A 6_A 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0454 seconds.