OPENSEQ.org - YDBL - ECOLI GREMLIN

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YDBL - Uncharacterized protein YdbL

UniProt:	P76076	Sequence MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVADINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG13733
Length:	108 (107)
Sequences:	197
Seq/Len:	1.84

YDBL
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
36_T	42_V	2.546	1.00
38_Y	42_V	2.069	0.99
33_V	54_V	1.968	0.99
11_L	55_A	1.854	0.98
64_S	67_Q	1.734	0.96
85_Q	89_A	1.677	0.95
98_Q	103_K	1.614	0.94
55_A	71_Q	1.394	0.85
80_A	90_R	1.338	0.81
75_S	78_D	1.331	0.81
54_V	73_N	1.325	0.80
75_S	82_L	1.313	0.80
87_L	91_A	1.287	0.78
43_A	50_T	1.281	0.77
9_A	15_V	1.276	0.77
28_R	44_L	1.252	0.75
22_L	53_L	1.237	0.74
6_L	11_L	1.227	0.73
63_A	70_K	1.212	0.71
12_V	28_R	1.204	0.71
44_L	106_R	1.203	0.71
64_S	73_N	1.201	0.71
6_L	20_M	1.199	0.70
27_A	72_N	1.185	0.69
40_Y	87_L	1.184	0.69
52_K	75_S	1.171	0.68
84_G	95_E	1.169	0.68
28_R	71_Q	1.168	0.67
25_D	60_E	1.164	0.67
74_V	82_L	1.162	0.67
24_L	32_R	1.117	0.62
53_L	99_G	1.116	0.62
33_V	41_L	1.116	0.62
40_Y	80_A	1.098	0.60
54_V	76_V	1.094	0.60
32_R	50_T	1.07	0.57
57_I	85_Q	1.068	0.57
9_A	59_A	1.064	0.57
41_L	55_A	1.054	0.56
83_A	87_L	1.046	0.55
3_K	15_V	1.043	0.55
44_L	96_Y	1.037	0.54
7_L	13_G	1.029	0.53
50_T	68_L	1.027	0.53
36_T	60_E	1.023	0.52
15_V	45_K	1.014	0.51
42_V	63_A	1.014	0.51
8_C	18_N	1.01	0.51
8_C	11_L	1.006	0.50
10_F	13_G	1.005	0.50
6_L	16_S	1.003	0.50

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
1dbgA	1	0.537	62	0.898	Contact Map	0.058
2nr7A	1	0.9352	32	0.915	Contact Map	0.117
3oa8B	3	0.9259	21.2	0.922	Contact Map	0.09
4elqA	2	0.7315	19.4	0.924	Contact Map	0.143
4b8vA	1	0.8796	19.3	0.924	Contact Map	0.264
3nt8A	2	0.8796	18.1	0.925	Contact Map	0.075
2jnaA	2	0.8796	16.3	0.926	Contact Map	0.062
2r0qC	4	0.8611	15.7	0.927	Contact Map	0.16
4k3vA	2	0.8981	14	0.929	Contact Map	0.137
4edpA	2	0.8333	12.8	0.93	Contact Map	0.219

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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