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OPENSEQ.org

CCME - NRFF
UniProt: P69490 - P32711
Length: 286
Sequences: 359
Seq/Len: 1.35
I_Prob: 0.17

CCME - Cytochrome c-type biogenesis protein CcmE
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CCME
NRFF - Formate-dependent nitrite reductase complex subunit NrfF
Paralog alert: 0.50 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NRFF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
111_V 54_E 1.55 0.17
36_L 38_I 1.42 0.12
36_L 46_Q 1.38 0.11
5_R 70_M 1.35 0.10
95_Y 92_V 1.32 0.09
70_S 126_K 1.24 0.07
104_R 54_E 1.21 0.07
135_T 59_V 1.19 0.06
65_M 93_R 1.19 0.06
96_E 114_L 1.14 0.05
43_I 123_V 1.12 0.05
30_L 58_P 1.12 0.05
35_D 46_Q 1.11 0.05
5_R 94_Y 1.11 0.05
119_N 83_W 1.08 0.04
34_I 36_L 1.07 0.04
30_L 46_Q 1.06 0.04
21_L 116_M 1.04 0.04
126_V 48_Q 1.04 0.04
99_L 49_N 1.02 0.04
6_K 56_N 1.01 0.03
62_V 58_P 1.01 0.03
81_T 111_V 1.01 0.03
41_G 108_L 0.99 0.03
91_V 81_I 0.99 0.03
46_G 94_Y 0.98 0.03
114_E 125_A 0.98 0.03
139_V 36_L 0.98 0.03
124_K 52_L 0.96 0.03
121_I 51_N 0.96 0.03
35_D 45_P 0.96 0.03
84_I 68_Y 0.95 0.03
121_I 46_Q 0.95 0.03
43_I 46_Q 0.94 0.03
12_A 118_L 0.94 0.03
18_G 31_Q 0.94 0.03
78_L 26_F 0.94 0.03
57_G 52_L 0.94 0.03
90_S 115_L 0.93 0.03
80_V 84_M 0.93 0.03
137_P 23_T 0.93 0.02
30_L 56_N 0.92 0.02
57_G 114_L 0.91 0.02
41_G 16_A 0.91 0.02
125_E 63_M 0.91 0.02
44_L 111_V 0.90 0.02
58_Q 91_F 0.89 0.02
60_L 97_P 0.88 0.02
105_E 89_G 0.88 0.02
41_G 116_M 0.88 0.02
12_A 66_Q 0.88 0.02
137_P 97_P 0.88 0.02
118_G 123_V 0.88 0.02
9_L 67_V 0.88 0.02
76_N 112_L 0.87 0.02
78_L 94_Y 0.87 0.02
121_I 35_A 0.87 0.02
104_R 60_A 0.86 0.02
114_E 76_N 0.86 0.02
5_R 35_A 0.86 0.02
30_L 38_I 0.86 0.02
98_I 84_M 0.86 0.02
117_K 79_E 0.86 0.02
11_I 75_K 0.85 0.02
42_E 45_P 0.85 0.02
77_S 26_F 0.85 0.02
28_Y 45_P 0.84 0.02
43_I 57_A 0.84 0.02
65_M 36_L 0.84 0.02
5_R 26_F 0.84 0.02
24_G 118_L 0.84 0.02
79_K 51_N 0.83 0.02
62_V 32_Q 0.83 0.02
32_S 100_G 0.83 0.02
106_G 103_L 0.83 0.02
83_T 111_V 0.83 0.02
139_V 51_N 0.83 0.02
46_G 66_Q 0.82 0.02
15_V 92_V 0.82 0.02
9_L 54_E 0.82 0.02
33_N 97_P 0.82 0.02
109_V 51_N 0.81 0.02
47_K 108_L 0.81 0.02
35_D 34_Q 0.81 0.02
107_Q 35_A 0.81 0.01
98_I 35_A 0.80 0.01
110_V 89_G 0.80 0.01
137_P 94_Y 0.80 0.01
65_M 65_H 0.80 0.01
13_C 30_Q 0.80 0.01
41_G 103_L 0.80 0.01
5_R 39_A 0.80 0.01
16_L 101_Q 0.79 0.01
108_G 92_V 0.79 0.01
20_A 83_W 0.79 0.01
35_D 51_N 0.79 0.01
6_K 38_I 0.79 0.01
46_G 70_M 0.79 0.01
54_P 53_L 0.79 0.01
94_S 113_L 0.79 0.01
136_P 57_A 0.79 0.01
114_E 114_L 0.79 0.01
133_N 23_T 0.78 0.01
9_L 109_P 0.78 0.01
39_T 108_L 0.77 0.01
109_V 109_P 0.77 0.01
44_L 112_L 0.77 0.01
141_K 117_A 0.77 0.01
119_N 58_P 0.77 0.01
65_M 84_M 0.77 0.01
11_I 54_E 0.76 0.01
24_G 120_L 0.76 0.01
95_Y 18_A 0.76 0.01
5_R 52_L 0.76 0.01
126_V 91_F 0.76 0.01
79_K 78_V 0.76 0.01
110_V 16_A 0.76 0.01
84_I 54_E 0.76 0.01
122_L 76_N 0.76 0.01
69_G 71_V 0.76 0.01
100_P 48_Q 0.76 0.01
41_G 24_W 0.75 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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