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OPENSEQ.org

KAD - RPOA
UniProt: P69441 - P0A7Z4
Length: 543
Sequences: 627
Seq/Len: 1.19
I_Prob: 0.03

KAD - Adenylate kinase
Paralog alert: 0.08 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: KAD
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
34_M 75_Q 1.44 0.03
91_P 123_I 1.12 0.01
20_I 80_E 1.09 0.01
168_L 110_V 1.05 0.01
209_L 59_V 1.05 0.01
42_G 198_L 0.98 0.01
34_M 80_E 0.95 0.01
103_V 70_T 0.94 0.01
176_A 173_V 0.93 0.01
66_A 313_S 0.93 0.01
101_I 90_V 0.93 0.01
120_I 102_L 0.92 0.01
135_V 131_C 0.92 0.01
3_I 177_Y 0.92 0.01
205_V 262_L 0.92 0.01
139_P 59_V 0.92 0.01
179_I 59_V 0.91 0.01
77_C 198_L 0.90 0.01
108_E 232_V 0.90 0.01
86_F 88_L 0.89 0.01
4_I 56_V 0.89 0.01
181_Y 162_E 0.89 0.01
82_L 278_I 0.88 0.01
175_T 143_R 0.88 0.01
196_V 74_V 0.88 0.01
86_F 146_V 0.87 0.01
89_T 117_H 0.87 0.01
110_D 140_I 0.87 0.01
8_A 75_Q 0.87 0.01
178_L 85_L 0.86 0.01
22_E 93_Q 0.86 0.01
205_V 193_E 0.86 0.01
184_K 109_P 0.86 0.01
134_H 51_M 0.85 0.01
68_V 114_D 0.85 0.00
168_L 257_V 0.85 0.00
124_R 131_C 0.85 0.00
157_K 126_P 0.84 0.00
5_L 286_E 0.84 0.00
40_K 98_V 0.83 0.00
162_E 285_T 0.82 0.00
62_E 127_Q 0.82 0.00
65_I 175_A 0.82 0.00
5_L 33_R 0.82 0.00
174_M 113_A 0.82 0.00
205_V 146_V 0.82 0.00
35_L 26_V 0.81 0.00
26_I 177_Y 0.81 0.00
178_L 59_V 0.81 0.00
149_T 80_E 0.81 0.00
150_G 119_G 0.80 0.00
109_F 113_A 0.80 0.00
33_D 312_L 0.80 0.00
151_E 133_L 0.80 0.00
3_I 311_G 0.79 0.00
214_G 171_L 0.79 0.00
209_L 284_R 0.79 0.00
28_Q 272_A 0.79 0.00
149_T 133_L 0.79 0.00
17_A 180_V 0.79 0.00
47_K 113_A 0.79 0.00
105_Y 39_L 0.78 0.00
68_V 104_K 0.78 0.00
40_K 309_S 0.78 0.00
23_K 127_Q 0.78 0.00
196_V 283_Q 0.78 0.00
192_K 173_V 0.78 0.00
181_Y 164_D 0.77 0.00
98_E 139_S 0.77 0.00
117_V 195_R 0.77 0.00
60_T 23_H 0.77 0.00
144_G 137_N 0.76 0.00
205_V 165_E 0.76 0.00
72_I 104_K 0.75 0.00
163_T 109_P 0.75 0.00
120_I 285_T 0.75 0.00
79_N 154_P 0.75 0.00
50_K 113_A 0.75 0.00
4_I 301_T 0.74 0.00
103_V 241_E 0.74 0.00
51_D 180_V 0.74 0.00
40_K 308_A 0.74 0.00
27_P 189_A 0.74 0.00
60_T 68_Y 0.74 0.00
120_I 213_P 0.74 0.00
8_A 135_D 0.74 0.00
67_L 128_H 0.74 0.00
82_L 255_R 0.74 0.00
52_I 257_V 0.73 0.00
64_V 169_G 0.73 0.00
209_L 85_L 0.73 0.00
37_A 127_Q 0.73 0.00
213_L 107_I 0.73 0.00
78_R 205_M 0.73 0.00
109_F 142_M 0.73 0.00
60_T 36_G 0.73 0.00
27_P 131_C 0.72 0.00
173_Q 71_K 0.72 0.00
38_A 36_G 0.72 0.00
18_Q 208_N 0.72 0.00
6_L 102_L 0.72 0.00
103_V 172_L 0.72 0.00
45_L 147_Q 0.72 0.00
139_P 85_L 0.72 0.00
17_A 97_E 0.72 0.00
170_E 205_M 0.71 0.00
107_L 263_T 0.71 0.00
100_G 58_E 0.71 0.00
151_E 8_F 0.71 0.00
18_Q 59_V 0.71 0.00
107_L 180_V 0.71 0.00
199_T 178_S 0.71 0.00
53_M 248_E 0.71 0.00
179_I 60_E 0.71 0.00
137_F 220_A 0.71 0.00
52_I 293_P 0.71 0.00
2_R 82_L 0.71 0.00
152_E 240_P 0.71 0.00
23_K 203_I 0.70 0.00
8_A 92_V 0.70 0.00
114_E 130_I 0.70 0.00
20_I 238_R 0.69 0.00
6_L 75_Q 0.69 0.00
109_F 246_K 0.69 0.00
72_I 173_V 0.69 0.00
54_D 36_G 0.69 0.00
164_V 259_D 0.69 0.00
72_I 19_V 0.69 0.00
11_A 126_P 0.69 0.00
196_V 142_M 0.69 0.00
124_R 130_I 0.69 0.00
16_Q 57_T 0.69 0.00
63_L 111_T 0.69 0.00
81_F 289_L 0.69 0.00
62_E 71_K 0.69 0.00
192_K 39_L 0.68 0.00
174_M 84_N 0.68 0.00
113_D 80_E 0.68 0.00
82_L 258_D 0.68 0.00
64_V 26_V 0.68 0.00
212_I 96_D 0.68 0.00
35_L 306_V 0.68 0.00
209_L 46_I 0.68 0.00
69_K 113_A 0.68 0.00
83_L 276_H 0.68 0.00
53_M 212_D 0.68 0.00
80_G 290_L 0.68 0.00
196_V 184_A 0.68 0.00
202_V 121_V 0.68 0.00
74_Q 95_K 0.67 0.00
168_L 311_G 0.67 0.00
114_E 243_K 0.67 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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