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OPENSEQ.org

DXR - RRF
UniProt: P45568 - P0A805
Length: 583
Sequences: 812
Seq/Len: 1.41
I_Prob: 0.00

DXR - 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DXR
RRF - Ribosome-recycling factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RRF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
105_A 29_T 0.96 0.00
378_V 24_I 0.94 0.00
221_D 161_Q 0.92 0.00
325_F 96_S 0.91 0.00
24_N 124_A 0.89 0.00
322_M 117_V 0.88 0.00
236_R 16_C 0.88 0.00
281_A 29_T 0.87 0.00
224_T 128_V 0.86 0.00
121_L 94_A 0.86 0.00
286_W 157_Q 0.85 0.00
191_R 72_R 0.85 0.00
374_C 167_A 0.84 0.00
372_P 185_F 0.83 0.00
204_D 127_A 0.83 0.00
335_L 160_V 0.82 0.00
32_A 24_I 0.82 0.00
93_D 57_V 0.82 0.00
195_L 71_D 0.82 0.00
45_Q 109_R 0.82 0.00
121_L 61_D 0.81 0.00
185_G 23_Q 0.79 0.00
101_I 64_T 0.79 0.00
354_T 16_C 0.79 0.00
251_H 179_E 0.79 0.00
146_L 111_K 0.79 0.00
56_M 139_V 0.79 0.00
177_G 182_L 0.78 0.00
260_V 172_E 0.78 0.00
181_I 56_S 0.78 0.00
120_I 148_I 0.77 0.00
121_L 60_E 0.77 0.00
229_G 106_T 0.77 0.00
120_I 41_V 0.77 0.00
349_Q 149_S 0.77 0.00
43_V 57_V 0.77 0.00
239_F 61_D 0.77 0.00
217_K 161_Q 0.76 0.00
327_Q 111_K 0.76 0.00
98_M 69_V 0.76 0.00
33_L 42_V 0.76 0.00
343_V 179_E 0.76 0.00
62_A 157_Q 0.76 0.00
160_L 172_E 0.76 0.00
252_P 149_S 0.75 0.00
371_E 127_A 0.75 0.00
286_W 117_V 0.75 0.00
191_R 27_I 0.75 0.00
258_S 94_A 0.74 0.00
99_A 146_K 0.74 0.00
256_I 118_R 0.74 0.00
120_I 119_G 0.74 0.00
221_D 165_D 0.74 0.00
225_M 116_I 0.74 0.00
283_T 37_L 0.74 0.00
352_R 171_I 0.73 0.00
310_P 70_F 0.73 0.00
9_S 72_R 0.73 0.00
279_P 99_R 0.72 0.00
270_Q 144_K 0.72 0.00
5_T 98_I 0.72 0.00
22_R 126_V 0.72 0.00
344_A 176_A 0.72 0.00
149_V 62_S 0.71 0.00
33_L 168_I 0.71 0.00
2_K 71_D 0.71 0.00
130_T 33_S 0.71 0.00
182_L 20_F 0.71 0.00
232_Y 136_N 0.71 0.00
107_L 146_K 0.70 0.00
352_R 90_N 0.70 0.00
389_A 125_R 0.70 0.00
107_L 179_E 0.70 0.00
34_V 123_Q 0.70 0.00
374_C 43_E 0.70 0.00
161_P 182_L 0.70 0.00
217_K 165_D 0.70 0.00
160_L 135_A 0.70 0.00
183_L 137_D 0.69 0.00
263_Q 51_L 0.69 0.00
48_E 43_E 0.69 0.00
115_R 166_A 0.69 0.00
345_A 121_A 0.69 0.00
60_A 180_A 0.69 0.00
329_Q 75_S 0.69 0.00
121_L 33_S 0.69 0.00
317_C 56_S 0.68 0.00
304_A 40_I 0.68 0.00
323_E 128_V 0.68 0.00
121_L 146_K 0.68 0.00
377_D 17_V 0.68 0.00
267_V 93_S 0.68 0.00
182_L 137_D 0.68 0.00
127_S 29_T 0.68 0.00
225_M 156_S 0.68 0.00
207_C 94_A 0.67 0.00
331_A 61_D 0.67 0.00
232_Y 71_D 0.67 0.00
5_T 34_P 0.67 0.00
350_Q 128_V 0.67 0.00
236_R 24_I 0.67 0.00
28_F 67_I 0.67 0.00
6_I 23_Q 0.67 0.00
240_N 113_L 0.66 0.00
322_M 113_L 0.66 0.00
40_T 76_P 0.66 0.00
113_A 135_A 0.66 0.00
332_T 34_P 0.66 0.00
121_L 26_K 0.66 0.00
131_C 33_S 0.66 0.00
232_Y 69_V 0.66 0.00
360_N 125_R 0.66 0.00
28_F 102_L 0.66 0.00
268_L 139_V 0.66 0.00
136_M 57_V 0.66 0.00
21_V 114_T 0.66 0.00
1_M 139_V 0.65 0.00
348_A 160_V 0.65 0.00
252_P 29_T 0.65 0.00
248_V 79_E 0.65 0.00
114_I 160_V 0.65 0.00
108_L 10_E 0.65 0.00
266_S 38_D 0.65 0.00
259_M 171_I 0.65 0.00
331_A 64_T 0.65 0.00
250_I 135_A 0.65 0.00
59_E 40_I 0.65 0.00
249_L 24_I 0.64 0.00
221_D 134_D 0.64 0.00
102_V 121_A 0.64 0.00
318_L 36_L 0.64 0.00
325_F 136_N 0.64 0.00
297_L 70_F 0.64 0.00
360_N 156_S 0.64 0.00
197_D 96_S 0.64 0.00
386_R 52_R 0.64 0.00
45_Q 70_F 0.64 0.00
121_L 143_L 0.64 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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