May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DXR - PYRH
UniProt: P45568 - P0A7E9
Length: 639
Sequences: 801
Seq/Len: 1.28
I_Prob: 0.00

DXR - 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DXR
PYRH - Uridylate kinase
Paralog alert: 0.90 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: PYRH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
16_S 165_T 1.08 0.00
265_G 166_K 1.07 0.00
374_C 106_S 0.98 0.00
84_A 161_V 0.93 0.00
213_S 86_M 0.93 0.00
98_M 219_N 0.93 0.00
89_A 159_D 0.92 0.00
281_A 61_F 0.90 0.00
325_F 150_C 0.89 0.00
41_R 41_I 0.89 0.00
112_A 129_N 0.86 0.00
250_I 7_P 0.86 0.00
9_S 102_A 0.85 0.00
121_L 211_H 0.85 0.00
232_Y 193_L 0.83 0.00
6_I 182_T 0.83 0.00
220_V 226_L 0.83 0.00
325_F 163_K 0.82 0.00
352_R 13_L 0.82 0.00
49_F 93_D 0.81 0.00
135_F 225_A 0.81 0.00
229_G 159_D 0.81 0.00
347_L 51_V 0.78 0.00
16_S 163_K 0.78 0.00
363_V 178_D 0.78 0.00
18_L 93_D 0.78 0.00
278_T 219_N 0.78 0.00
382_D 140_N 0.78 0.00
262_Y 39_Q 0.77 0.00
216_R 75_V 0.77 0.00
88_M 183_M 0.76 0.00
135_F 55_I 0.76 0.00
25_P 31_A 0.76 0.00
373_Q 165_T 0.76 0.00
149_V 142_F 0.75 0.00
325_F 120_A 0.74 0.00
52_R 50_Q 0.74 0.00
219_S 163_K 0.74 0.00
221_D 151_L 0.74 0.00
317_C 202_L 0.74 0.00
306_T 188_T 0.74 0.00
244_S 173_A 0.74 0.00
355_D 185_E 0.74 0.00
211_N 161_V 0.73 0.00
374_C 102_A 0.73 0.00
108_L 126_L 0.72 0.00
285_A 55_I 0.72 0.00
2_K 160_V 0.72 0.00
99_A 165_T 0.71 0.00
201_M 191_E 0.71 0.00
203_P 239_I 0.71 0.00
149_V 105_M 0.71 0.00
248_V 50_Q 0.70 0.00
363_V 219_N 0.70 0.00
283_T 216_R 0.70 0.00
84_A 183_M 0.70 0.00
237_W 106_S 0.70 0.00
272_G 21_L 0.70 0.00
9_S 64_A 0.70 0.00
240_N 12_I 0.69 0.00
278_T 165_T 0.69 0.00
325_F 208_A 0.69 0.00
179_V 32_S 0.69 0.00
219_S 114_C 0.69 0.00
4_L 213_L 0.69 0.00
93_D 222_K 0.69 0.00
107_L 95_L 0.69 0.00
333_T 134_L 0.69 0.00
375_V 215_I 0.69 0.00
271_L 52_G 0.69 0.00
220_V 213_L 0.68 0.00
138_A 233_E 0.68 0.00
100_A 13_L 0.68 0.00
204_D 99_Y 0.68 0.00
221_D 119_W 0.68 0.00
310_P 21_L 0.68 0.00
350_Q 182_T 0.68 0.00
2_K 153_G 0.68 0.00
217_K 151_L 0.68 0.00
313_D 41_I 0.68 0.00
267_V 132_V 0.67 0.00
243_A 163_K 0.67 0.00
180_S 49_I 0.67 0.00
161_P 106_S 0.67 0.00
47_L 179_P 0.67 0.00
53_Y 12_I 0.67 0.00
350_Q 212_K 0.67 0.00
20_V 203_A 0.67 0.00
305_L 83_A 0.67 0.00
359_L 210_D 0.66 0.00
183_L 51_V 0.66 0.00
101_I 226_L 0.66 0.00
217_K 119_W 0.66 0.00
226_M 34_L 0.66 0.00
256_I 184_Y 0.66 0.00
336_N 66_L 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1155 seconds.