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OPENSEQ.org

PTPC2 - YADI
UniProt: P42905 - P36881
Length: 279
Sequences: 660
Seq/Len: 2.51
I_Prob: 0.01

PTPC2 - Putative N-acetylgalactosamine permease IIC component 2
Paralog alert: 0.85 [within 20: 0.14] - ratio of genomes with paralogs
Cluster includes: PTPC2
YADI - Putative phosphotransferase enzyme IIA component YadI
Paralog alert: 0.66 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: YADI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
87_T 71_P 1.02 0.01
92_P 71_P 1.02 0.01
127_A 68_A 0.94 0.00
103_A 26_A 0.94 0.00
42_V 8_C 0.92 0.00
126_L 54_E 0.90 0.00
46_L 53_H 0.90 0.00
16_F 13_A 0.90 0.00
98_V 29_Q 0.88 0.00
78_T 22_K 0.87 0.00
80_V 38_G 0.87 0.00
33_V 107_M 0.86 0.00
119_G 6_I 0.85 0.00
58_L 60_G 0.84 0.00
106_V 95_P 0.84 0.00
102_F 23_K 0.84 0.00
89_G 48_M 0.84 0.00
9_F 118_E 0.80 0.00
41_L 55_A 0.80 0.00
102_F 36_W 0.78 0.00
83_A 88_V 0.78 0.00
18_A 99_Q 0.78 0.00
105_A 127_L 0.78 0.00
97_G 103_C 0.77 0.00
81_G 3_G 0.77 0.00
78_T 52_L 0.76 0.00
4_S 101_M 0.76 0.00
43_L 5_V 0.75 0.00
101_P 27_L 0.75 0.00
126_L 129_H 0.75 0.00
35_L 33_V 0.74 0.00
66_L 38_G 0.74 0.00
57_E 8_C 0.74 0.00
119_G 28_L 0.74 0.00
55_T 44_L 0.74 0.00
14_I 7_T 0.74 0.00
11_L 121_A 0.73 0.00
77_G 19_A 0.72 0.00
6_L 111_E 0.71 0.00
37_P 62_I 0.71 0.00
59_V 118_E 0.71 0.00
109_G 125_S 0.71 0.00
75_I 99_Q 0.70 0.00
126_L 50_D 0.70 0.00
45_D 32_A 0.70 0.00
22_M 8_C 0.70 0.00
38_L 7_T 0.70 0.00
75_I 6_I 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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