| UniProt: | P36881 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12322 | ||
| Length: | 146 (132) | ||
| Sequences: | 1162 | ||
| Seq/Len: | 8.80 |
| YADI
Paralog alert: 0.66 [within 20: 0.03] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 21_E | 26_A | 3.48 | 1.00 | |
| 31_R | 54_E | 2.928 | 1.00 | |
| 11_D | 14_Q | 2.692 | 1.00 | |
| 8_C | 92_V | 2.519 | 1.00 | |
| 108_T | 111_E | 2.415 | 1.00 | |
| 16_I | 92_V | 2.39 | 1.00 | |
| 12_R | 16_I | 2.342 | 1.00 | |
| 39_L | 47_M | 2.045 | 1.00 | |
| 100_M | 116_I | 1.994 | 1.00 | |
| 99_Q | 119_L | 1.85 | 1.00 | |
| 14_Q | 34_N | 1.846 | 1.00 | |
| 15_E | 18_D | 1.764 | 1.00 | |
| 7_T | 48_M | 1.719 | 1.00 | |
| 6_I | 92_V | 1.687 | 1.00 | |
| 63_F | 86_C | 1.685 | 1.00 | |
| 65_T | 73_Y | 1.541 | 1.00 | |
| 45_S | 78_L | 1.541 | 1.00 | |
| 13_A | 34_N | 1.535 | 1.00 | |
| 33_V | 51_A | 1.51 | 1.00 | |
| 46_R | 50_D | 1.503 | 1.00 | |
| 20_L | 101_M | 1.49 | 1.00 | |
| 21_E | 27_L | 1.485 | 1.00 | |
| 48_M | 76_A | 1.408 | 0.99 | |
| 35_F | 44_L | 1.405 | 0.99 | |
| 64_L | 96_L | 1.401 | 0.99 | |
| 6_I | 30_C | 1.366 | 0.99 | |
| 92_V | 97_I | 1.366 | 0.99 | |
| 10_D | 19_A | 1.361 | 0.99 | |
| 64_L | 100_M | 1.356 | 0.99 | |
| 45_S | 75_V | 1.356 | 0.99 | |
| 107_M | 111_E | 1.347 | 0.99 | |
| 17_L | 32_A | 1.34 | 0.99 | |
| 17_L | 21_E | 1.339 | 0.99 | |
| 31_R | 51_A | 1.3 | 0.99 | |
| 17_L | 30_C | 1.281 | 0.98 | |
| 87_E | 110_S | 1.275 | 0.98 | |
| 33_V | 40_S | 1.27 | 0.98 | |
| 3_G | 51_A | 1.267 | 0.98 | |
| 24_H | 102_A | 1.23 | 0.98 | |
| 6_I | 17_L | 1.225 | 0.98 | |
| 19_A | 94_L | 1.197 | 0.97 | |
| 68_A | 125_S | 1.181 | 0.97 | |
| 50_D | 53_H | 1.173 | 0.97 | |
| 72_P | 76_A | 1.173 | 0.97 | |
| 8_C | 13_A | 1.169 | 0.97 | |
| 4_W | 100_M | 1.162 | 0.97 | |
| 56_D | 60_G | 1.153 | 0.96 | |
| 2_L | 109_S | 1.144 | 0.96 | |
| 23_K | 94_L | 1.128 | 0.96 | |
| 64_L | 93_T | 1.116 | 0.95 | |
| 71_P | 75_V | 1.11 | 0.95 | |
| 29_Q | 57_S | 1.102 | 0.95 | |
| 4_W | 96_L | 1.088 | 0.95 | |
| 22_K | 37_R | 1.082 | 0.94 | |
| 119_L | 123_E | 1.078 | 0.94 | |
| 30_C | 101_M | 1.061 | 0.94 | |
| 93_T | 124_V | 1.048 | 0.93 | |
| 77_S | 127_L | 1.046 | 0.93 | |
| 94_L | 98_E | 1.04 | 0.93 | |
| 118_E | 121_A | 1.034 | 0.92 | |
| 64_L | 97_I | 1.022 | 0.92 | |
| 6_I | 97_I | 1.017 | 0.91 | |
| 43_M | 46_R | 1.014 | 0.91 | |
| 7_T | 35_F | 1.01 | 0.91 | |
| 89_I | 117_V | 1.007 | 0.91 | |
| 36_W | 39_L | 1.004 | 0.91 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3lfhA | 6 | 0.9658 | 100 | 0.272 | Contact Map | 0.729 |
| 1pdoA | 1 | 0.9178 | 100 | 0.281 | Contact Map | 0.658 |
| 3iprA | 6 | 0.9658 | 100 | 0.302 | Contact Map | 0.821 |
| 3mtqA | 2 | 0.9247 | 100 | 0.308 | Contact Map | 0.813 |
| 3bedA | 2 | 0.9384 | 100 | 0.324 | Contact Map | 0.773 |
| 3gx1A | 2 | 0.8425 | 99.9 | 0.396 | Contact Map | 0.688 |
| 3gdwA | 2 | 0.8973 | 99.9 | 0.416 | Contact Map | 0.734 |
| 3ct6A | 2 | 0.8562 | 99.9 | 0.427 | Contact Map | 0.55 |
| 3b48A | 6 | 0.8425 | 99.9 | 0.45 | Contact Map | 0.477 |
| 1td9A | 6 | 0.7877 | 35.5 | 0.922 | Contact Map | 0.103 |
Sequence Conservation (Image Generated using WebLogo v3)