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OPENSEQ.org

HOLB - RECR
UniProt: P28631 - P0A7H6
Length: 535
Sequences: 809
Seq/Len: 1.60
I_Prob: 0.08

HOLB - DNA polymerase III subunit delta'
Paralog alert: 0.69 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: HOLB
RECR - Recombination protein RecR
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
32_L 175_V 1.40 0.08
121_T 7_L 1.32 0.06
95_E 54_I 1.15 0.04
206_Q 87_E 1.11 0.04
257_K 22_P 1.09 0.03
204_L 124_G 1.06 0.03
122_D 142_L 1.05 0.03
9_P 181_L 1.05 0.03
89_G 92_I 1.05 0.03
51_Q 179_G 1.04 0.03
109_A 64_T 1.01 0.03
45_S 74_N 1.01 0.03
9_P 149_E 0.98 0.02
102_E 44_A 0.97 0.02
240_Q 146_P 0.96 0.02
197_S 184_V 0.96 0.02
19_Q 118_I 0.93 0.02
102_E 16_C 0.90 0.02
231_S 137_I 0.90 0.02
254_D 74_N 0.90 0.02
66_Q 167_E 0.90 0.02
195_A 31_T 0.89 0.02
66_Q 45_Q 0.89 0.02
127_A 103_G 0.89 0.02
40_L 191_H 0.89 0.02
67_L 41_M 0.88 0.02
39_A 42_R 0.88 0.01
120_L 91_D 0.87 0.01
184_Q 167_E 0.87 0.01
109_A 47_L 0.87 0.01
121_T 147_T 0.86 0.01
316_L 32_L 0.86 0.01
224_V 9_Q 0.86 0.01
310_L 50_A 0.86 0.01
318_R 24_S 0.85 0.01
112_V 179_G 0.85 0.01
73_H 152_A 0.85 0.01
159_C 176_P 0.84 0.01
289_I 171_I 0.84 0.01
181_T 168_A 0.84 0.01
137_A 52_S 0.84 0.01
234_A 44_A 0.83 0.01
155_L 156_Y 0.83 0.01
247_W 179_G 0.83 0.01
112_V 116_D 0.82 0.01
320_E 33_L 0.82 0.01
190_A 132_L 0.82 0.01
275_A 167_E 0.82 0.01
128_L 132_L 0.81 0.01
9_P 84_C 0.81 0.01
314_D 15_R 0.81 0.01
189_A 142_L 0.81 0.01
39_A 68_V 0.80 0.01
309_E 146_P 0.80 0.01
286_L 42_R 0.80 0.01
50_C 103_G 0.79 0.01
298_E 169_S 0.79 0.01
22_R 14_L 0.79 0.01
113_W 161_C 0.79 0.01
27_L 146_P 0.79 0.01
74_P 53_E 0.79 0.01
285_R 92_I 0.78 0.01
164_L 90_A 0.78 0.01
117_A 91_D 0.78 0.01
197_S 175_V 0.78 0.01
231_S 45_Q 0.78 0.01
162_H 10_L 0.78 0.01
32_L 50_A 0.78 0.01
28_L 195_G 0.78 0.01
99_K 157_I 0.78 0.01
25_H 180_E 0.78 0.01
256_L 20_V 0.77 0.01
311_L 112_L 0.77 0.01
39_A 83_I 0.77 0.01
24_H 36_D 0.77 0.01
319_I 20_V 0.76 0.01
42_Y 177_V 0.76 0.01
127_A 84_C 0.76 0.01
282_S 157_I 0.76 0.01
193_L 30_F 0.76 0.01
234_A 130_Q 0.76 0.01
9_P 146_P 0.76 0.01
313_T 190_S 0.75 0.01
76_Y 189_L 0.75 0.01
40_L 42_R 0.75 0.01
111_V 47_L 0.75 0.01
62_C 103_G 0.74 0.01
174_T 167_E 0.74 0.01
16_A 64_T 0.74 0.01
137_A 142_L 0.74 0.01
192_R 169_S 0.74 0.01
292_D 135_E 0.74 0.01
214_E 134_E 0.74 0.01
172_A 14_L 0.74 0.01
289_I 62_T 0.74 0.01
22_R 144_T 0.74 0.01
248_L 121_D 0.74 0.01
233_L 8_T 0.73 0.01
28_L 91_D 0.73 0.01
44_L 101_F 0.73 0.01
8_R 79_E 0.73 0.01
281_L 140_V 0.72 0.01
127_A 144_T 0.72 0.01
300_L 98_T 0.72 0.01
73_H 124_G 0.72 0.01
262_A 32_L 0.72 0.01
46_R 44_A 0.72 0.01
30_Q 190_S 0.72 0.01
276_E 82_Q 0.71 0.01
313_T 195_G 0.71 0.01
288_A 13_A 0.71 0.01
239_E 191_H 0.71 0.01
230_Y 44_A 0.71 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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