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OPENSEQ.org

MNME - RNPA
UniProt: P25522 - P0A7Y8
Length: 573
Sequences: 484
Seq/Len: 0.85
I_Prob: 0.00

MNME - tRNA modification GTPase MnmE
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: MNME
RNPA - Ribonuclease P protein component
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNPA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
13_P 105_L 1.42 0.00
422_E 90_K 1.41 0.00
178_D 50_T 1.36 0.00
20_G 71_E 1.33 0.00
446_I 74_R 1.27 0.00
242_A 21_V 1.26 0.00
446_I 71_E 1.24 0.00
284_I 18_F 1.21 0.00
11_A 8_R 1.20 0.00
15_G 66_K 1.18 0.00
170_V 59_A 1.15 0.00
144_A 90_K 1.13 0.00
163_L 86_V 1.13 0.00
442_L 22_F 1.12 0.00
345_G 87_V 1.12 0.00
300_L 87_V 1.11 0.00
36_V 85_F 1.11 0.00
51_F 22_F 1.11 0.00
174_I 63_N 1.10 0.00
269_I 21_V 1.10 0.00
255_L 87_V 1.08 0.00
176_F 63_N 1.06 0.00
8_V 46_R 1.06 0.00
179_E 66_K 1.05 0.00
176_F 74_R 1.05 0.00
364_G 71_E 1.04 0.00
387_L 33_I 1.03 0.00
295_Q 59_A 1.02 0.00
69_G 56_V 1.01 0.00
417_E 36_L 1.01 0.00
292_E 73_F 0.99 0.00
431_S 90_K 0.99 0.00
124_A 111_R 0.99 0.00
135_A 78_H 0.99 0.00
137_S 22_F 0.98 0.00
299_V 86_V 0.98 0.00
438_T 25_P 0.98 0.00
422_E 31_P 0.98 0.00
396_L 65_I 0.97 0.00
207_A 21_V 0.97 0.00
240_E 93_V 0.96 0.00
24_I 71_E 0.96 0.00
452_I 63_N 0.96 0.00
390_R 97_D 0.96 0.00
421_E 90_K 0.95 0.00
69_G 105_L 0.95 0.00
352_H 86_V 0.95 0.00
88_V 12_L 0.95 0.00
363_E 17_Q 0.95 0.00
220_V 71_E 0.95 0.00
5_D 97_D 0.95 0.00
420_A 59_A 0.94 0.00
301_F 11_R 0.94 0.00
442_L 88_V 0.94 0.00
277_A 114_R 0.94 0.00
266_L 19_T 0.94 0.00
163_L 21_V 0.94 0.00
184_L 86_V 0.94 0.00
246_D 90_K 0.94 0.00
442_L 90_K 0.93 0.00
20_G 74_R 0.93 0.00
312_D 47_I 0.93 0.00
277_A 115_L 0.93 0.00
127_E 46_R 0.93 0.00
443_L 11_R 0.92 0.00
33_A 41_S 0.92 0.00
393_L 33_I 0.92 0.00
176_F 66_K 0.91 0.00
179_E 63_N 0.91 0.00
178_D 34_T 0.91 0.00
417_E 27_R 0.91 0.00
401_E 17_Q 0.91 0.00
90_L 47_I 0.91 0.00
168_I 57_R 0.90 0.00
296_A 90_K 0.90 0.00
72_S 66_K 0.89 0.00
22_L 35_I 0.89 0.00
15_G 63_N 0.88 0.00
61_Q 30_T 0.88 0.00
255_L 93_V 0.88 0.00
324_L 15_P 0.88 0.00
51_F 98_N 0.88 0.00
5_D 103_E 0.87 0.00
375_S 90_K 0.87 0.00
135_A 88_V 0.87 0.00
309_D 27_R 0.86 0.00
45_Y 36_L 0.86 0.00
422_E 34_T 0.86 0.00
227_A 63_N 0.86 0.00
318_P 118_G 0.85 0.00
10_Q 8_R 0.85 0.00
302_M 93_V 0.85 0.00
18_G 49_L 0.85 0.00
433_I 21_V 0.85 0.00
184_L 71_E 0.85 0.00
281_V 85_F 0.84 0.00
360_R 75_L 0.84 0.00
39_K 85_F 0.84 0.00
156_V 80_L 0.84 0.00
220_V 86_V 0.84 0.00
202_A 79_E 0.83 0.00
107_R 18_F 0.83 0.00
180_E 73_F 0.83 0.00
149_Q 64_R 0.83 0.00
278_S 18_F 0.82 0.00
387_L 65_I 0.82 0.00
178_D 25_P 0.82 0.00
340_T 76_R 0.82 0.00
287_E 18_F 0.82 0.00
290_W 59_A 0.82 0.00
247_I 49_L 0.81 0.00
392_H 84_D 0.81 0.00
221_I 98_N 0.81 0.00
254_V 53_K 0.81 0.00
128_A 58_R 0.81 0.00
59_L 69_T 0.81 0.00
8_V 17_Q 0.81 0.00
220_V 65_I 0.81 0.00
333_V 102_S 0.81 0.00
124_A 33_I 0.81 0.00
421_E 50_T 0.81 0.00
304_D 104_A 0.80 0.00
339_I 43_G 0.80 0.00
262_D 65_I 0.80 0.00
392_H 14_T 0.80 0.00
288_R 73_F 0.80 0.00
119_D 13_L 0.80 0.00
410_L 31_P 0.79 0.00
233_L 21_V 0.79 0.00
333_V 51_V 0.79 0.00
45_Y 90_K 0.79 0.00
420_A 22_F 0.79 0.00
291_Q 43_G 0.79 0.00
77_D 81_P 0.79 0.00
160_V 57_R 0.79 0.00
72_S 51_V 0.79 0.00
24_I 108_L 0.79 0.00
211_S 104_A 0.79 0.00
94_L 111_R 0.79 0.00
21_I 88_V 0.79 0.00
430_L 84_D 0.79 0.00
432_E 66_K 0.78 0.00
158_H 59_A 0.78 0.00
300_L 99_R 0.78 0.00
189_I 60_H 0.78 0.00
241_A 69_T 0.78 0.00
166_L 63_N 0.78 0.00
284_I 53_K 0.78 0.00
140_A 17_Q 0.78 0.00
37_L 97_D 0.78 0.00
222_A 94_A 0.77 0.00
29_A 61_E 0.77 0.00
215_E 77_Q 0.77 0.00
82_Q 66_K 0.77 0.00
355_I 105_L 0.77 0.00
153_S 16_S 0.77 0.00
121_L 26_Q 0.77 0.00
365_V 69_T 0.76 0.00
387_L 60_H 0.76 0.00
29_A 36_L 0.76 0.00
213_L 64_R 0.76 0.00
69_G 97_D 0.76 0.00
21_I 54_K 0.76 0.00
421_E 22_F 0.76 0.00
166_L 59_A 0.76 0.00
93_L 31_P 0.76 0.00
179_E 11_R 0.76 0.00
127_E 84_D 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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