May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
LPXD - RRF
UniProt: P21645 - P0A805
Length: 526
Sequences: 333
Seq/Len: 0.64
I_Prob: 0.26
LPXD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
Paralog alert: 0.09 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: LPXD 		RRF - Ribosome-recycling factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RRF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
196_P 109_R 1.94 0.26
87_A 109_R 1.43 0.07
142_V 171_I 1.33 0.05
17_L 114_T 1.23 0.04
100_I 160_V 1.23 0.04
120_A 168_I 1.21 0.03
327_S 182_L 1.19 0.03
306_P 109_R 1.18 0.03
5_R 128_V 1.15 0.03
160_I 19_A 1.12 0.02
305_I 158_D 1.10 0.02
319_L 182_L 1.10 0.02
72_A 78_V 1.09 0.02
268_G 117_V 1.08 0.02
92_T 181_E 1.07 0.02
103_S 111_K 1.06 0.02
282_K 185_F 1.06 0.02
30_S 62_S 1.06 0.02
90_L 166_A 1.06 0.02
251_G 20_F 1.05 0.02
155_W 71_D 1.04 0.02
35_Q 78_V 1.03 0.02
46_K 145_D 1.03 0.02
39_I 36_L 1.03 0.02
196_P 117_V 1.02 0.02
228_G 116_I 1.02 0.02
17_L 19_A 1.01 0.02
261_I 56_S 1.01 0.02
131_G 17_V 1.01 0.02
290_M 182_L 1.01 0.02
138_A 185_F 0.99 0.01
52_G 47_T 0.99 0.01
10_A 68_N 0.97 0.01
66_L 17_V 0.97 0.01
302_S 182_L 0.95 0.01
106_I 113_L 0.95 0.01
196_P 36_L 0.95 0.01
155_W 69_V 0.95 0.01
178_V 47_T 0.94 0.01
25_I 51_L 0.94 0.01
9_L 104_P 0.94 0.01
214_T 67_I 0.94 0.01
319_L 137_D 0.94 0.01
296_T 160_V 0.94 0.01
251_G 117_V 0.93 0.01
147_K 126_V 0.93 0.01
33_S 128_V 0.93 0.01
28_V 109_R 0.93 0.01
139_G 157_Q 0.92 0.01
40_T 116_I 0.92 0.01
234_Q 58_T 0.92 0.01
138_A 89_L 0.92 0.01
259_L 54_L 0.92 0.01
220_L 183_M 0.92 0.01
90_L 109_R 0.92 0.01
256_A 117_V 0.92 0.01
163_E 119_G 0.91 0.01
122_A 131_V 0.91 0.01
335_R 7_K 0.91 0.01
7_A 143_L 0.90 0.01
278_E 168_I 0.90 0.01
61_M 57_V 0.90 0.01
255_M 54_L 0.90 0.01
241_V 55_A 0.89 0.01
61_M 149_S 0.89 0.01
123_V 121_A 0.89 0.01
76_V 65_L 0.89 0.01
231_I 55_A 0.89 0.01
124_I 113_L 0.88 0.01
147_K 153_D 0.88 0.01
313_W 142_L 0.88 0.01
228_G 155_R 0.87 0.01
144_K 40_I 0.87 0.01
120_A 125_R 0.87 0.01
268_G 185_F 0.87 0.01
238_A 40_I 0.87 0.01
196_P 113_L 0.87 0.01
284_T 152_D 0.87 0.01
224_I 74_M 0.87 0.01
141_F 125_R 0.86 0.01
144_K 160_V 0.86 0.01
224_I 128_V 0.86 0.01
292_M 181_E 0.86 0.01
222_D 160_V 0.86 0.01
9_L 12_R 0.85 0.01
314_R 49_T 0.85 0.01
279_I 175_L 0.84 0.01
102_P 43_E 0.84 0.01
139_G 136_N 0.84 0.01
57_S 47_T 0.84 0.01
285_V 47_T 0.84 0.01
251_G 22_T 0.83 0.01
123_V 12_R 0.83 0.01
230_I 39_G 0.83 0.01
22_D 158_D 0.83 0.01
203_I 152_D 0.83 0.01
313_W 79_E 0.83 0.01
238_A 156_S 0.83 0.01
290_M 71_D 0.82 0.01
30_S 171_I 0.82 0.01
246_N 170_K 0.82 0.01
310_N 51_L 0.82 0.01
327_S 175_L 0.82 0.01
234_Q 23_Q 0.82 0.01
38_H 123_Q 0.82 0.01
126_S 4_D 0.81 0.01
315_K 55_A 0.81 0.01
263_R 160_V 0.81 0.01
88_Q 109_R 0.81 0.01
205_D 76_P 0.81 0.01
195_I 100_V 0.81 0.01
205_D 152_D 0.81 0.01
136_I 168_I 0.81 0.01
202_I 23_Q 0.81 0.01
36_T 160_V 0.81 0.01
192_W 64_T 0.81 0.01
85_R 67_I 0.81 0.01
273_I 7_K 0.81 0.01
145_N 139_V 0.80 0.01
268_G 181_E 0.80 0.01
129_E 126_V 0.80 0.01
133_N 131_V 0.80 0.01
32_Q 21_K 0.80 0.01
61_M 174_A 0.80 0.01
198_I 25_S 0.80 0.01
164_I 83_M 0.80 0.01
294_P 139_V 0.80 0.01
304_G 117_V 0.80 0.01
306_P 113_L 0.80 0.01
172_I 137_D 0.79 0.01
315_K 183_M 0.79 0.01
124_I 149_S 0.79 0.01
198_I 24_I 0.79 0.01
38_H 173_A 0.79 0.01
219_A 38_D 0.79 0.01
238_A 8_D 0.79 0.01
122_A 43_E 0.79 0.01
211_A 72_R 0.78 0.01
32_Q 128_V 0.78 0.01
206_R 124_A 0.78 0.01
324_D 182_L 0.78 0.01
28_V 25_S 0.78 0.01
246_N 185_F 0.78 0.01
156_A 96_S 0.78 0.01
94_P 70_F 0.78 0.01
325_D 118_R 0.78 0.01
106_I 19_A 0.78 0.01
59_V 62_S 0.77 0.01
145_N 152_D 0.77 0.01
203_I 139_V 0.77 0.01
251_G 8_D 0.77 0.01
284_T 100_V 0.77 0.01
238_A 116_I 0.77 0.01
314_R 182_L 0.77 0.01
109_T 25_S 0.77 0.01
198_I 148_I 0.76 0.01
246_N 116_I 0.76 0.01
318_A 149_S 0.76 0.01
259_L 128_V 0.76 0.01
87_A 113_L 0.76 0.01
74_L 59_V 0.76 0.01
271_S 125_R 0.76 0.01
118_I 116_I 0.76 0.01
198_I 139_V 0.76 0.01
306_P 145_D 0.76 0.01
13_L 121_A 0.76 0.01
11_Q 128_V 0.76 0.01
89_I 126_V 0.76 0.01
286_T 27_I 0.76 0.01
228_G 78_V 0.76 0.01
281_D 154_R 0.75 0.01
125_E 16_C 0.75 0.01
226_G 57_V 0.75 0.01
185_Y 102_L 0.75 0.01
100_I 139_V 0.75 0.01
4_I 139_V 0.75 0.01
203_I 156_S 0.75 0.01
16_E 73_S 0.75 0.01
187_N 180_A 0.74 0.01
266_M 70_F 0.74 0.01
136_I 169_K 0.74 0.01
5_R 24_I 0.74 0.01
192_W 26_K 0.74 0.01
91_D 182_L 0.74 0.01
273_I 43_E 0.74 0.01
163_E 69_V 0.74 0.01
136_I 153_D 0.74 0.01
256_A 97_D 0.73 0.01
214_T 139_V 0.73 0.01
180_A 11_V 0.73 0.01
112_L 85_S 0.73 0.01
283_V 139_V 0.73 0.01
47_Y 42_V 0.73 0.01
198_I 79_E 0.73 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0869 seconds.