May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NADA - NADC
UniProt: P11458 - P30011
Length: 644
Sequences: 557
Seq/Len: 0.96
I_Prob: 0.00

NADA - Quinolinate synthase A
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NADA
NADC - Nicotinate-nucleotide pyrophosphorylase [carboxylating]
Paralog alert: 0.12 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NADC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
72_A 27_V 1.27 0.00
61_T 294_M 1.15 0.00
115_L 217_E 1.10 0.00
109_L 240_T 1.08 0.00
257_R 27_V 1.08 0.00
50_T 124_F 1.02 0.00
240_V 145_T 1.00 0.00
44_M 131_V 0.99 0.00
202_V 191_I 0.91 0.00
330_R 114_L 0.91 0.00
173_I 265_K 0.89 0.00
220_D 223_D 0.89 0.00
94_T 71_K 0.89 0.00
143_S 27_V 0.87 0.00
260_V 214_V 0.87 0.00
143_S 282_A 0.87 0.00
307_A 163_L 0.86 0.00
334_P 149_L 0.86 0.00
133_D 96_D 0.85 0.00
38_K 283_L 0.84 0.00
108_T 36_G 0.84 0.00
321_V 245_E 0.84 0.00
171_E 239_E 0.83 0.00
126_A 67_V 0.83 0.00
115_L 234_M 0.82 0.00
255_H 108_E 0.81 0.00
145_A 136_R 0.81 0.00
103_T 212_V 0.81 0.00
303_N 285_K 0.81 0.00
35_R 218_N 0.81 0.00
38_K 93_D 0.81 0.00
31_E 248_K 0.81 0.00
277_K 126_Q 0.80 0.00
237_A 51_P 0.79 0.00
313_E 249_R 0.79 0.00
41_N 181_D 0.79 0.00
116_D 285_K 0.78 0.00
245_Q 141_L 0.78 0.00
246_L 126_Q 0.78 0.00
50_T 159_L 0.78 0.00
328_R 267_L 0.78 0.00
35_R 136_R 0.78 0.00
329_E 265_K 0.78 0.00
258_L 126_Q 0.78 0.00
40_R 168_L 0.78 0.00
108_T 256_L 0.77 0.00
97_I 283_L 0.77 0.00
320_E 67_V 0.77 0.00
327_L 249_R 0.77 0.00
261_A 183_F 0.77 0.00
42_A 184_L 0.76 0.00
39_E 245_E 0.76 0.00
81_S 53_N 0.76 0.00
136_V 192_A 0.76 0.00
162_L 158_G 0.76 0.00
335_L 127_T 0.75 0.00
217_E 64_E 0.75 0.00
308_I 199_A 0.75 0.00
341_F 163_L 0.75 0.00
82_T 193_S 0.75 0.00
101_E 229_G 0.74 0.00
101_E 53_N 0.74 0.00
77_K 142_L 0.74 0.00
122_E 81_L 0.74 0.00
38_K 91_H 0.74 0.00
143_S 192_A 0.74 0.00
191_G 41_A 0.74 0.00
77_K 60_V 0.74 0.00
280_L 263_T 0.73 0.00
126_A 72_R 0.73 0.00
269_K 58_A 0.73 0.00
225_V 255_L 0.73 0.00
54_I 248_K 0.73 0.00
218_Y 227_K 0.73 0.00
179_K 230_A 0.72 0.00
104_I 31_L 0.72 0.00
50_T 162_A 0.72 0.00
182_G 272_E 0.72 0.00
255_H 196_V 0.72 0.00
218_Y 248_K 0.72 0.00
140_A 26_A 0.72 0.00
130_A 196_V 0.72 0.00
328_R 290_L 0.72 0.00
154_V 187_E 0.72 0.00
182_G 204_S 0.72 0.00
154_V 295_R 0.71 0.00
127_F 262_V 0.71 0.00
207_K 79_I 0.71 0.00
306_Q 68_F 0.71 0.00
29_Y 294_M 0.71 0.00
111_A 188_N 0.71 0.00
116_D 66_G 0.70 0.00
81_S 255_L 0.70 0.00
53_E 239_E 0.70 0.00
157_S 29_Q 0.70 0.00
162_L 267_L 0.70 0.00
276_D 148_Q 0.70 0.00
27_A 200_V 0.70 0.00
174_I 125_V 0.69 0.00
324_D 268_R 0.69 0.00
56_Q 124_F 0.69 0.00
238_D 262_V 0.69 0.00
152_W 142_L 0.69 0.00
79_P 147_T 0.69 0.00
249_A 262_V 0.69 0.00
157_S 221_E 0.69 0.00
146_V 30_A 0.69 0.00
39_E 223_D 0.69 0.00
276_D 92_V 0.69 0.00
81_S 52_E 0.68 0.00
295_A 221_E 0.68 0.00
44_M 273_T 0.68 0.00
73_R 156_L 0.68 0.00
70_E 58_A 0.68 0.00
223_I 290_L 0.68 0.00
101_E 104_L 0.68 0.00
96_K 221_E 0.68 0.00
72_A 77_V 0.68 0.00
217_E 269_E 0.68 0.00
305_L 180_S 0.68 0.00
251_K 60_V 0.68 0.00
340_D 74_V 0.68 0.00
276_D 102_Q 0.68 0.00
196_W 273_T 0.68 0.00
193_I 193_S 0.67 0.00
138_V 66_G 0.67 0.00
99_S 72_R 0.67 0.00
303_N 198_Q 0.67 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1103 seconds.