May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RNH2 - YRAN
UniProt: P10442 - P45465
Length: 329
Sequences: 425
Seq/Len: 1.42
I_Prob: 0.00

RNH2 - Ribonuclease HII
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNH2
YRAN - UPF0102 protein YraN
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YRAN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
43_L 115_F 1.22 0.00
62_K 60_T 1.22 0.00
42_G 23_W 1.08 0.00
109_G 97_A 1.03 0.00
179_A 41_A 1.02 0.00
92_Q 113_V 1.01 0.00
121_A 52_L 0.99 0.00
12_V 36_L 0.94 0.00
22_P 43_V 0.90 0.00
48_K 52_L 0.87 0.00
159_F 88_L 0.86 0.00
149_A 78_A 0.84 0.00
80_E 85_Q 0.83 0.00
94_A 61_I 0.83 0.00
125_G 110_F 0.82 0.00
181_E 112_V 0.81 0.00
86_A 61_I 0.80 0.00
13_A 73_Y 0.80 0.00
106_L 67_Y 0.80 0.00
167_T 50_I 0.80 0.00
95_V 28_R 0.80 0.00
70_L 86_H 0.79 0.00
65_A 110_F 0.78 0.00
180_T 126_A 0.78 0.00
84_L 88_L 0.78 0.00
158_G 58_R 0.77 0.00
162_H 45_E 0.77 0.00
153_V 41_A 0.77 0.00
187_F 52_L 0.77 0.00
87_T 91_T 0.77 0.00
124_K 63_V 0.77 0.00
180_T 25_A 0.76 0.00
152_I 39_I 0.76 0.00
186_S 105_T 0.76 0.00
70_L 81_T 0.75 0.00
173_K 90_Q 0.75 0.00
169_F 69_R 0.74 0.00
141_V 48_G 0.74 0.00
174_L 36_L 0.73 0.00
15_V 91_T 0.73 0.00
99_H 58_R 0.73 0.00
75_P 54_M 0.72 0.00
26_A 66_R 0.71 0.00
69_S 44_N 0.71 0.00
161_Q 125_D 0.70 0.00
137_I 17_K 0.70 0.00
176_E 113_V 0.70 0.00
51_E 69_R 0.70 0.00
186_S 97_A 0.70 0.00
177_H 50_I 0.69 0.00
35_D 110_F 0.69 0.00
56_A 16_T 0.69 0.00
68_W 91_T 0.69 0.00
60_E 115_F 0.69 0.00
42_G 67_Y 0.69 0.00
26_A 76_A 0.68 0.00
68_W 50_I 0.68 0.00
160_A 124_K 0.68 0.00
186_S 53_I 0.68 0.00
69_S 122_W 0.67 0.00
148_A 50_I 0.67 0.00
28_V 122_W 0.67 0.00
99_H 53_I 0.67 0.00
174_L 91_T 0.67 0.00
109_G 76_A 0.66 0.00
50_S 37_R 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0071 seconds.