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OPENSEQ.org

EFTU2 - RL7
UniProt: P0CE48 - P0A7K2
Length: 515
Sequences: 493
Seq/Len: 0.96
I_Prob: 0.00

EFTU2 - Elongation factor Tu 2
Paralog alert: 0.35 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: CYSN EFTU1 EFTU2
RL7 - 50S ribosomal protein L7/L12
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL7
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
4kix6:VContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
269_G 13_A 1.08 0.00
222_S 13_A 1.03 0.00
186_E 12_V 1.01 0.00
172_R 86_D 1.01 0.00
2_S 65_N 1.00 0.00
171_V 76_A 0.98 0.00
342_I 102_D 0.96 0.00
138_C 4_T 0.92 0.00
40_Y 75_G 0.89 0.00
222_S 89_E 0.88 0.00
321_T 98_G 0.88 0.00
270_R 98_G 0.86 0.00
373_L 27_M 0.86 0.00
222_S 30_K 0.84 0.00
208_D 102_D 0.84 0.00
315_D 53_T 0.83 0.00
57_K 60_K 0.83 0.00
154_V 102_D 0.82 0.00
72_T 116_A 0.81 0.00
222_S 38_A 0.79 0.00
365_H 44_G 0.79 0.00
5_K 31_F 0.79 0.00
196_L 15_M 0.79 0.00
244_E 102_D 0.79 0.00
346_E 105_E 0.79 0.00
367_I 46_V 0.78 0.00
164_P 74_R 0.78 0.00
206_A 90_S 0.77 0.00
58_A 86_D 0.77 0.00
306_E 89_E 0.76 0.00
288_E 58_I 0.76 0.00
389_V 78_G 0.75 0.00
15_V 13_A 0.75 0.00
313_S 120_V 0.75 0.00
71_D 10_E 0.74 0.00
370_D 76_A 0.74 0.00
376_A 83_E 0.74 0.00
152_M 68_A 0.74 0.00
193_A 27_M 0.74 0.00
241_E 2_S 0.74 0.00
37_A 89_E 0.73 0.00
162_D 98_G 0.73 0.00
108_A 73_V 0.73 0.00
21_V 23_L 0.72 0.00
102_A 114_A 0.71 0.00
386_A 12_V 0.71 0.00
299_I 8_I 0.70 0.00
108_A 88_V 0.70 0.00
147_L 43_A 0.70 0.00
304_K 22_E 0.70 0.00
193_A 67_V 0.70 0.00
57_K 94_A 0.70 0.00
215_I 56_D 0.70 0.00
134_F 96_K 0.70 0.00
268_E 109_K 0.70 0.00
37_A 103_D 0.70 0.00
342_I 2_S 0.69 0.00
358_K 39_V 0.69 0.00
66_S 90_S 0.69 0.00
256_C 19_D 0.69 0.00
358_K 89_E 0.69 0.00
309_V 90_S 0.69 0.00
194_G 47_E 0.69 0.00
170_I 69_V 0.69 0.00
130_Y 74_R 0.68 0.00
357_I 9_I 0.68 0.00
243_V 118_V 0.68 0.00
186_E 3_I 0.68 0.00
300_K 86_D 0.68 0.00
45_R 46_V 0.68 0.00
64_N 11_A 0.67 0.00
215_I 54_E 0.67 0.00
250_E 21_V 0.67 0.00
359_M 58_I 0.67 0.00
47_F 41_V 0.67 0.00
268_E 43_A 0.67 0.00
171_V 112_E 0.67 0.00
167_D 52_K 0.67 0.00
311_I 106_A 0.67 0.00
249_K 48_A 0.67 0.00
232_V 5_K 0.67 0.00
284_R 54_E 0.66 0.00
326_G 24_I 0.66 0.00
382_R 29_E 0.66 0.00
64_N 8_I 0.66 0.00
255_T 107_L 0.66 0.00
284_R 63_G 0.66 0.00
204_E 45_P 0.66 0.00
246_V 95_L 0.65 0.00
74_T 120_V 0.65 0.00
322_P 28_E 0.65 0.00
287_I 106_A 0.65 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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