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OPENSEQ.org

RL18 - RPOA
UniProt: P0C018 - P0A7Z4
Length: 446
Sequences: 772
Seq/Len: 1.76
I_Prob: 0.41

RL18 - 50S ribosomal protein L18
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL18
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
21_L 71_K 1.54 0.41
49_V 177_Y 1.11 0.13
87_I 313_S 1.09 0.12
83_L 200_K 1.07 0.11
98_Q 90_V 1.06 0.11
10_R 304_K 1.04 0.10
34_H 307_L 1.00 0.09
91_S 132_H 1.00 0.09
113_A 309_S 1.00 0.09
69_D 142_M 0.95 0.07
30_R 155_A 0.95 0.07
103_V 280_D 0.95 0.07
20_E 273_E 0.95 0.07
69_D 19_V 0.94 0.07
103_V 203_I 0.93 0.07
65_T 261_E 0.93 0.07
104_Q 242_V 0.92 0.06
85_K 226_E 0.91 0.06
2_D 146_V 0.89 0.06
87_I 207_T 0.88 0.06
56_K 80_E 0.88 0.06
14_A 79_L 0.88 0.05
103_V 126_P 0.88 0.05
105_A 54_C 0.87 0.05
16_R 80_E 0.87 0.05
98_Q 51_M 0.87 0.05
36_Y 11_P 0.85 0.05
17_K 105_S 0.85 0.05
12_T 35_F 0.85 0.05
108_D 101_T 0.85 0.05
32_P 210_T 0.84 0.05
69_D 147_Q 0.84 0.05
81_R 182_R 0.84 0.05
32_P 177_Y 0.84 0.05
9_R 309_S 0.84 0.04
56_K 85_L 0.83 0.04
55_E 107_I 0.83 0.04
56_K 180_V 0.82 0.04
21_L 273_E 0.82 0.04
17_K 23_H 0.82 0.04
90_V 78_I 0.82 0.04
49_V 108_G 0.82 0.04
103_V 173_V 0.81 0.04
109_A 80_E 0.81 0.04
43_N 59_V 0.81 0.04
3_K 37_H 0.81 0.04
10_R 121_V 0.80 0.04
117_F 264_V 0.80 0.04
8_I 107_I 0.80 0.04
42_P 3_G 0.80 0.04
53_T 46_I 0.79 0.04
109_A 285_T 0.79 0.04
20_E 293_P 0.78 0.04
70_A 266_S 0.78 0.04
67_N 297_K 0.78 0.04
55_E 171_L 0.78 0.04
103_V 91_R 0.78 0.04
57_A 164_D 0.78 0.04
102_R 57_T 0.77 0.03
72_A 140_I 0.77 0.03
35_I 261_E 0.77 0.03
104_Q 181_E 0.77 0.03
43_N 111_T 0.77 0.03
81_R 144_I 0.77 0.03
102_R 264_V 0.77 0.03
2_D 290_L 0.76 0.03
30_R 283_Q 0.76 0.03
49_V 101_T 0.76 0.03
6_A 314_L 0.76 0.03
53_T 185_Y 0.76 0.03
55_E 177_Y 0.76 0.03
18_L 119_G 0.76 0.03
45_S 4_S 0.76 0.03
50_A 243_K 0.75 0.03
86_G 49_S 0.75 0.03
68_K 138_A 0.74 0.03
68_K 129_V 0.74 0.03
36_Y 209_G 0.74 0.03
70_A 33_R 0.74 0.03
5_S 163_E 0.74 0.03
89_D 20_S 0.74 0.03
20_E 325_S 0.73 0.03
39_V 103_N 0.73 0.03
21_L 249_F 0.73 0.03
87_I 197_D 0.73 0.03
5_S 211_I 0.73 0.03
33_R 35_F 0.73 0.03
28_V 144_I 0.72 0.03
23_A 213_P 0.72 0.03
46_E 200_K 0.72 0.03
77_A 246_K 0.72 0.03
20_E 204_E 0.72 0.03
82_A 196_T 0.72 0.03
37_A 309_S 0.71 0.03
95_S 267_A 0.71 0.03
4_K 257_V 0.71 0.03
69_D 105_S 0.71 0.03
29_H 212_D 0.71 0.03
35_I 168_I 0.71 0.03
24_T 3_G 0.71 0.03
53_T 64_V 0.71 0.03
11_A 272_A 0.70 0.03
62_L 126_P 0.70 0.03
89_D 140_I 0.70 0.03
102_R 83_L 0.70 0.02
106_L 264_V 0.70 0.02
18_L 39_L 0.70 0.02
75_G 83_L 0.70 0.02
42_P 263_T 0.70 0.02
18_L 124_V 0.70 0.02
62_L 88_L 0.69 0.02
34_H 126_P 0.69 0.02
81_R 176_C 0.69 0.02
82_A 197_D 0.69 0.02
95_S 43_L 0.69 0.02
72_A 101_T 0.69 0.02
24_T 132_H 0.68 0.02
57_A 127_Q 0.68 0.02
29_H 132_H 0.68 0.02
30_R 51_M 0.68 0.02
65_T 171_L 0.68 0.02
78_V 154_P 0.68 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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