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OPENSEQ.org

RL6 - SECY
UniProt: P0AG55 - P0AGA2
Length: 620
Sequences: 1270
Seq/Len: 2.08
I_Prob: 0.01

RL6 - 50S ribosomal protein L6
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL6
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
123_A 243_R 1.15 0.01
50_L 383_F 1.06 0.01
174_A 26_V 1.00 0.01
146_A 183_I 0.99 0.01
169_V 148_L 0.99 0.01
86_K 283_I 0.96 0.01
13_A 30_L 0.96 0.01
11_V 386_L 0.96 0.01
9_V 314_Q 0.95 0.01
83_F 433_L 0.93 0.01
109_F 265_L 0.92 0.01
116_Q 319_L 0.92 0.01
139_Q 82_I 0.92 0.01
62_W 240_G 0.91 0.01
173_E 177_Q 0.88 0.01
121_I 33_F 0.88 0.01
19_I 231_T 0.87 0.01
131_I 162_V 0.87 0.01
8_P 353_V 0.86 0.01
11_V 180_E 0.85 0.01
96_A 113_R 0.85 0.01
99_K 91_I 0.84 0.01
47_D 174_L 0.84 0.01
52_F 381_I 0.84 0.01
128_Q 286_F 0.84 0.01
60_D 220_L 0.83 0.01
163_R 148_L 0.83 0.01
35_R 32_V 0.83 0.01
99_K 102_L 0.83 0.01
106_S 176_E 0.83 0.01
18_K 319_L 0.82 0.01
162_V 290_I 0.82 0.01
109_F 222_L 0.81 0.01
32_E 141_N 0.81 0.01
174_A 416_F 0.81 0.01
94_Y 335_L 0.81 0.01
98_V 421_Q 0.80 0.01
84_T 246_V 0.80 0.01
5_A 245_V 0.80 0.01
140_V 193_A 0.80 0.01
65_A 411_V 0.80 0.01
72_L 225_V 0.80 0.01
105_L 346_L 0.79 0.01
162_V 235_V 0.79 0.01
144_V 272_A 0.79 0.00
143_Q 60_I 0.79 0.00
18_K 225_V 0.78 0.00
61_G 378_A 0.78 0.00
54_P 421_Q 0.78 0.00
89_L 164_L 0.78 0.00
16_D 104_E 0.78 0.00
80_T 51_K 0.78 0.00
61_G 105_I 0.78 0.00
30_N 229_A 0.77 0.00
37_L 378_A 0.77 0.00
9_V 192_F 0.77 0.00
50_L 183_I 0.77 0.00
52_F 158_F 0.76 0.00
52_F 51_K 0.76 0.00
34_T 330_F 0.75 0.00
98_V 237_V 0.75 0.00
169_V 33_F 0.75 0.00
150_A 244_I 0.75 0.00
57_G 420_V 0.74 0.00
148_L 31_I 0.74 0.00
153_R 92_I 0.74 0.00
165_A 302_W 0.73 0.00
44_K 189_I 0.73 0.00
5_A 26_V 0.73 0.00
48_N 23_L 0.73 0.00
72_L 40_P 0.73 0.00
131_I 164_L 0.73 0.00
76_V 23_L 0.73 0.00
109_F 141_N 0.73 0.00
30_N 95_L 0.73 0.00
163_R 351_A 0.72 0.00
34_T 340_R 0.72 0.00
4_V 77_I 0.72 0.00
133_L 425_M 0.72 0.00
36_T 35_I 0.72 0.00
23_V 158_F 0.72 0.00
113_V 82_I 0.72 0.00
117_L 87_S 0.71 0.00
56_D 35_I 0.71 0.00
83_F 128_A 0.71 0.00
176_K 342_T 0.71 0.00
22_Q 23_L 0.71 0.00
20_N 250_K 0.71 0.00
131_I 235_V 0.70 0.00
77_I 272_A 0.70 0.00
137_D 281_S 0.70 0.00
96_A 110_E 0.70 0.00
89_L 60_I 0.70 0.00
20_N 212_Q 0.70 0.00
89_L 253_Q 0.70 0.00
64_Q 228_F 0.69 0.00
170_R 339_P 0.69 0.00
170_R 269_V 0.69 0.00
163_R 294_F 0.69 0.00
37_L 67_F 0.69 0.00
59_A 114_R 0.69 0.00
45_H 229_A 0.69 0.00
67_T 364_K 0.69 0.00
46_A 35_I 0.69 0.00
38_N 340_R 0.69 0.00
154_P 197_A 0.69 0.00
176_K 38_F 0.69 0.00
111_H 359_G 0.69 0.00
165_A 172_M 0.68 0.00
129_T 177_Q 0.68 0.00
60_D 224_A 0.68 0.00
65_A 245_V 0.68 0.00
162_V 28_G 0.68 0.00
25_T 257_V 0.68 0.00
121_I 383_F 0.68 0.00
104_N 264_H 0.68 0.00
84_T 370_M 0.68 0.00
90_V 326_I 0.68 0.00
169_V 218_L 0.68 0.00
113_V 369_V 0.68 0.00
144_V 118_Q 0.68 0.00
19_I 267_L 0.68 0.00
75_M 41_I 0.68 0.00
85_K 386_L 0.68 0.00
10_V 320_L 0.68 0.00
16_D 319_L 0.67 0.00
169_V 329_C 0.67 0.00
119_A 31_I 0.67 0.00
144_V 236_F 0.67 0.00
33_L 406_L 0.67 0.00
5_A 416_F 0.67 0.00
18_K 229_A 0.67 0.00
36_T 341_E 0.67 0.00
38_N 366_I 0.67 0.00
76_V 367_D 0.67 0.00
50_L 207_I 0.67 0.00
83_F 384_I 0.67 0.00
8_P 22_R 0.66 0.00
38_N 187_I 0.66 0.00
125_C 52_L 0.66 0.00
13_A 301_N 0.66 0.00
155_E 333_T 0.66 0.00
65_A 166_T 0.66 0.00
41_V 18_E 0.66 0.00
64_Q 91_I 0.66 0.00
92_V 263_T 0.66 0.00
46_A 47_A 0.66 0.00
49_T 323_S 0.66 0.00
104_N 77_I 0.66 0.00
83_F 392_R 0.66 0.00
163_R 239_R 0.66 0.00
107_L 1_M 0.66 0.00
162_V 308_L 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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