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OPENSEQ.org

RL17 - RPOA
UniProt: P0AG44 - P0A7Z4
Length: 456
Sequences: 833
Seq/Len: 1.89
I_Prob: 0.39

RL17 - 50S ribosomal protein L17
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL17
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
40_K 85_L 1.51 0.39
51_L 173_V 1.21 0.18
72_D 220_A 1.15 0.15
32_E 143_R 1.14 0.15
23_N 194_Q 1.14 0.15
74_E 27_T 1.11 0.14
38_L 257_V 1.04 0.11
84_G 126_P 0.99 0.09
49_E 279_G 0.99 0.09
50_P 60_E 0.95 0.08
25_A 288_E 0.93 0.07
68_A 167_P 0.92 0.07
104_A 88_L 0.92 0.07
76_V 232_V 0.91 0.07
29_V 60_E 0.90 0.06
61_A 82_L 0.90 0.06
10_L 182_R 0.89 0.06
31_H 133_L 0.89 0.06
100_C 171_L 0.87 0.06
16_H 202_V 0.86 0.05
63_R 31_L 0.86 0.05
61_A 167_P 0.85 0.05
113_I 177_Y 0.83 0.05
86_R 184_A 0.83 0.05
7_G 65_L 0.83 0.05
73_N 8_F 0.82 0.05
58_D 31_L 0.82 0.04
45_R 194_Q 0.81 0.04
99_K 271_K 0.81 0.04
18_Q 31_L 0.80 0.04
84_G 110_V 0.80 0.04
47_V 59_V 0.79 0.04
82_E 222_T 0.79 0.04
32_E 97_E 0.79 0.04
98_L 60_E 0.79 0.04
78_K 146_V 0.79 0.04
32_E 80_E 0.78 0.04
28_L 78_I 0.78 0.04
33_I 88_L 0.78 0.04
51_L 213_P 0.78 0.04
44_L 185_Y 0.78 0.04
61_A 257_V 0.78 0.04
75_I 18_Q 0.77 0.04
80_F 36_G 0.77 0.04
97_I 247_P 0.77 0.04
43_E 180_V 0.77 0.04
21_F 70_T 0.77 0.04
43_E 295_L 0.77 0.04
61_A 164_D 0.76 0.04
16_H 194_Q 0.76 0.04
14_S 295_L 0.76 0.04
16_H 253_L 0.76 0.04
113_I 256_P 0.75 0.03
100_C 220_A 0.75 0.03
40_K 123_I 0.75 0.03
71_R 263_T 0.75 0.03
25_A 188_E 0.74 0.03
83_L 164_D 0.74 0.03
1_M 14_V 0.74 0.03
56_K 304_K 0.73 0.03
12_R 124_V 0.73 0.03
68_A 142_M 0.73 0.03
33_I 75_Q 0.73 0.03
111_A 102_L 0.73 0.03
79_L 85_L 0.73 0.03
29_V 324_A 0.73 0.03
76_V 144_I 0.73 0.03
59_S 186_N 0.73 0.03
75_I 180_V 0.73 0.03
40_K 171_L 0.72 0.03
116_V 180_V 0.72 0.03
115_L 126_P 0.72 0.03
113_I 229_E 0.72 0.03
118_R 280_D 0.71 0.03
32_E 180_V 0.71 0.03
55_A 2_Q 0.71 0.03
70_T 257_V 0.71 0.03
83_L 220_A 0.71 0.03
44_L 283_Q 0.70 0.03
46_R 295_L 0.70 0.03
95_T 208_N 0.70 0.03
62_N 301_T 0.70 0.03
16_H 297_K 0.70 0.03
72_D 70_T 0.70 0.03
113_I 117_H 0.69 0.03
19_A 91_R 0.69 0.03
23_N 198_L 0.69 0.03
55_A 133_L 0.69 0.03
72_D 142_M 0.69 0.03
81_N 144_I 0.68 0.02
8_R 228_L 0.68 0.02
20_M 130_I 0.68 0.02
98_L 309_S 0.68 0.02
67_F 156_S 0.68 0.02
57_T 180_V 0.68 0.02
23_N 197_D 0.68 0.02
76_V 196_T 0.68 0.02
114_E 64_V 0.67 0.02
49_E 280_D 0.67 0.02
55_A 205_M 0.67 0.02
87_F 107_I 0.67 0.02
17_R 209_G 0.67 0.02
91_A 208_N 0.67 0.02
70_T 20_S 0.67 0.02
108_A 113_A 0.67 0.02
67_F 37_H 0.67 0.02
40_K 71_K 0.67 0.02
8_R 33_R 0.67 0.02
48_V 172_L 0.66 0.02
57_T 125_K 0.66 0.02
76_V 186_N 0.66 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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