| UniProt: | P0AG44 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10878 | ||
| Length: | 127 (120) | ||
| Sequences: | 1260 | ||
| Seq/Len: | 10.50 |
| RL17
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 30_R | 72_D | 3.006 | 1.00 | |
| 32_E | 78_K | 2.907 | 1.00 | |
| 44_L | 113_I | 2.771 | 1.00 | |
| 8_R | 43_E | 2.702 | 1.00 | |
| 38_L | 111_A | 2.614 | 1.00 | |
| 16_H | 23_N | 2.387 | 1.00 | |
| 29_V | 48_V | 2.251 | 1.00 | |
| 33_I | 114_E | 2.239 | 1.00 | |
| 52_I | 115_L | 2.229 | 1.00 | |
| 25_A | 48_V | 2.212 | 1.00 | |
| 95_T | 113_I | 1.963 | 1.00 | |
| 20_M | 24_M | 1.919 | 1.00 | |
| 61_A | 65_L | 1.873 | 1.00 | |
| 96_R | 114_E | 1.828 | 1.00 | |
| 35_K | 112_Y | 1.779 | 1.00 | |
| 28_L | 48_V | 1.768 | 1.00 | |
| 29_V | 115_L | 1.732 | 1.00 | |
| 66_A | 80_F | 1.702 | 1.00 | |
| 77_A | 81_N | 1.702 | 1.00 | |
| 32_E | 86_R | 1.669 | 1.00 | |
| 20_M | 40_K | 1.642 | 1.00 | |
| 54_L | 66_A | 1.64 | 1.00 | |
| 67_F | 76_V | 1.566 | 1.00 | |
| 23_N | 27_S | 1.547 | 1.00 | |
| 14_S | 18_Q | 1.529 | 1.00 | |
| 25_A | 51_L | 1.509 | 1.00 | |
| 26_G | 75_I | 1.503 | 1.00 | |
| 38_L | 99_K | 1.49 | 1.00 | |
| 65_L | 69_R | 1.464 | 1.00 | |
| 36_T | 41_A | 1.461 | 1.00 | |
| 102_F | 107_N | 1.457 | 1.00 | |
| 90_R | 116_V | 1.444 | 1.00 | |
| 16_H | 20_M | 1.436 | 1.00 | |
| 25_A | 47_V | 1.413 | 1.00 | |
| 97_I | 111_A | 1.411 | 1.00 | |
| 59_S | 62_N | 1.375 | 0.99 | |
| 33_I | 112_Y | 1.363 | 0.99 | |
| 49_E | 97_I | 1.352 | 0.99 | |
| 10_L | 43_E | 1.332 | 0.99 | |
| 29_V | 75_I | 1.318 | 0.99 | |
| 22_R | 71_R | 1.31 | 0.99 | |
| 100_C | 112_Y | 1.306 | 0.99 | |
| 63_R | 80_F | 1.283 | 0.99 | |
| 78_K | 82_E | 1.281 | 0.99 | |
| 12_R | 17_R | 1.257 | 0.99 | |
| 57_T | 62_N | 1.256 | 0.99 | |
| 58_D | 62_N | 1.23 | 0.98 | |
| 51_L | 79_L | 1.223 | 0.98 | |
| 45_R | 97_I | 1.205 | 0.98 | |
| 24_M | 27_S | 1.203 | 0.98 | |
| 9_Q | 13_N | 1.181 | 0.98 | |
| 13_N | 16_H | 1.164 | 0.97 | |
| 54_L | 65_L | 1.155 | 0.97 | |
| 81_N | 85_P | 1.14 | 0.97 | |
| 60_V | 64_R | 1.135 | 0.97 | |
| 65_L | 68_A | 1.116 | 0.96 | |
| 70_T | 75_I | 1.111 | 0.96 | |
| 20_M | 27_S | 1.096 | 0.96 | |
| 26_G | 70_T | 1.095 | 0.96 | |
| 22_R | 26_G | 1.091 | 0.96 | |
| 87_F | 115_L | 1.056 | 0.95 | |
| 30_R | 75_I | 1.04 | 0.94 | |
| 55_A | 79_L | 1.04 | 0.94 | |
| 43_E | 46_R | 1.034 | 0.94 | |
| 45_R | 49_E | 1.027 | 0.94 | |
| 55_A | 84_G | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4kixN | 1 | 1 | 100 | 0.008 | Contact Map | 0.812 |
| 3bboP | 1 | 0.9134 | 100 | 0.044 | Contact Map | 0.671 |
| 1gd8A | 9 | 0.9213 | 100 | 0.052 | Contact Map | 0.814 |
| 2zjrK | 1 | 0.9134 | 100 | 0.058 | Contact Map | 0.712 |
| 3j3wN | 1 | 0.8819 | 100 | 0.106 | Contact Map | 0.736 |
| 2cqmA | 1 | 0.9055 | 100 | 0.146 | Contact Map | 0.626 |
| 2bkmA | 2 | 0.4173 | 12.6 | 0.945 | Contact Map | 0.226 |
| 1ux8A | 1 | 0.4409 | 10.3 | 0.947 | Contact Map | 0.248 |
| 3aq9A | 2 | 0.3937 | 7.5 | 0.95 | Contact Map | 0.187 |
| 4hzfA | 2 | 0.7953 | 6.4 | 0.952 | Contact Map | 0.208 |
Sequence Conservation (Image Generated using WebLogo v3)