May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
RISA - TADA
UniProt: P0AFU8 - P68398
Length: 380
Sequences: 812
Seq/Len: 2.43
I_Prob: 0.03
RISA - Riboflavin synthase
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RISA 		TADA - tRNA-specific adenosine deaminase
Paralog alert: 0.74 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: TADA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
86_R 24_D 1.16 0.03
12_L 99_I 0.92 0.01
103_I 109_A 0.81 0.01
71_T 95_I 0.75 0.01
93_E 51_R 0.75 0.01
14_S 130_V 0.72 0.01
93_E 60_I 0.71 0.01
71_T 144_L 0.69 0.01
8_G 24_D 0.69 0.01
157_F 137_L 0.68 0.01
52_T 80_L 0.67 0.01
7_Q 46_N 0.67 0.01
93_E 46_N 0.67 0.01
24_H 13_R 0.64 0.01
80_D 40_V 0.64 0.01
63_L 105_G 0.63 0.01
51_V 118_M 0.62 0.01
78_V 41_I 0.61 0.01
145_I 141_C 0.61 0.01
43_A 110_K 0.61 0.01
103_I 155_E 0.61 0.01
77_K 119_D 0.60 0.01
64_M 32_A 0.60 0.01
5_I 79_T 0.60 0.01
113_L 38_N 0.60 0.00
151_E 93_A 0.59 0.00
151_E 41_I 0.59 0.00
136_Y 114_A 0.59 0.00
130_L 92_G 0.59 0.00
9_T 51_R 0.59 0.00
164_E 113_A 0.59 0.00
127_D 130_V 0.59 0.00
100_S 148_F 0.59 0.00
145_I 19_A 0.58 0.00
113_L 17_T 0.58 0.00
77_K 122_H 0.58 0.00
45_N 114_A 0.57 0.00
191_V 105_G 0.57 0.00
111_K 119_D 0.57 0.00
39_G 15_A 0.57 0.00
102_H 102_V 0.57 0.00
100_S 83_T 0.56 0.00
150_G 147_D 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0107 seconds.