May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NUSG - SECE
UniProt: P0AFG0 - P0AG96
Length: 308
Sequences: 234
Seq/Len: 0.77
I_Prob: 0.02

NUSG - Transcription antitermination protein NusG
Paralog alert: 0.28 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUSG RFAH
SECE - Preprotein translocase subunit SecE
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_T 80_R 1.61 0.02
56_Q 71_F 1.58 0.02
152_D 101_T 1.50 0.01
32_L 19_W 1.42 0.01
114_R 80_R 1.37 0.01
75_M 74_E 1.35 0.01
161_S 49_V 1.31 0.01
158_L 103_V 1.24 0.01
30_I 90_T 1.24 0.01
120_D 22_V 1.23 0.01
18_F 36_Y 1.21 0.01
18_F 121_F 1.20 0.01
63_K 62_T 1.20 0.01
99_R 79_V 1.19 0.01
126_T 33_N 1.15 0.01
54_G 82_V 1.15 0.01
105_D 73_R 1.15 0.01
101_A 124_G 1.11 0.01
157_R 80_R 1.10 0.01
114_R 100_V 1.10 0.01
90_M 88_Q 1.09 0.01
44_V 18_K 1.09 0.01
20_G 105_S 1.09 0.01
127_L 68_T 1.08 0.01
32_L 22_V 1.08 0.00
156_S 2_S 1.08 0.00
86_V 123_T 1.06 0.00
120_D 106_L 1.06 0.00
99_R 93_T 1.05 0.00
152_D 123_T 1.03 0.00
32_L 110_G 1.03 0.00
58_R 80_R 1.02 0.00
83_V 114_I 1.00 0.00
126_T 19_W 1.00 0.00
128_F 106_L 0.99 0.00
25_S 115_L 0.99 0.00
98_D 62_T 0.99 0.00
46_T 42_P 0.98 0.00
23_A 33_N 0.98 0.00
174_D 50_I 0.98 0.00
163_S 126_R 0.97 0.00
31_K 122_I 0.97 0.00
75_M 66_K 0.97 0.00
29_H 29_A 0.97 0.00
64_F 81_K 0.97 0.00
154_E 99_A 0.96 0.00
154_E 102_A 0.96 0.00
126_T 111_L 0.96 0.00
93_I 81_K 0.95 0.00
35_M 122_I 0.95 0.00
12_V 82_V 0.95 0.00
115_L 101_T 0.95 0.00
105_D 100_V 0.94 0.00
13_Q 101_T 0.94 0.00
108_V 54_A 0.94 0.00
37_D 2_S 0.94 0.00
118_V 101_T 0.94 0.00
126_T 120_S 0.94 0.00
126_T 71_F 0.93 0.00
82_L 83_I 0.93 0.00
123_R 73_R 0.93 0.00
36_E 117_R 0.93 0.00
35_M 100_V 0.93 0.00
13_Q 23_V 0.93 0.00
26_L 76_R 0.93 0.00
15_F 101_T 0.91 0.00
24_T 74_E 0.91 0.00
57_R 126_R 0.91 0.00
127_L 120_S 0.91 0.00
114_R 62_T 0.91 0.00
15_F 97_V 0.91 0.00
37_D 54_A 0.90 0.00
158_L 7_A 0.90 0.00
41_E 59_A 0.90 0.00
76_N 106_L 0.89 0.00
155_K 108_L 0.89 0.00
78_A 2_S 0.89 0.00
176_S 17_M 0.89 0.00
29_H 101_T 0.89 0.00
52_I 80_R 0.88 0.00
120_D 118_L 0.88 0.00
79_S 2_S 0.88 0.00
76_N 81_K 0.87 0.00
159_K 71_F 0.87 0.00
58_R 62_T 0.87 0.00
58_R 76_R 0.87 0.00
18_F 91_L 0.87 0.00
125_K 47_A 0.86 0.00
81_H 6_E 0.86 0.00
116_Q 115_L 0.86 0.00
158_L 49_V 0.86 0.00
32_L 122_I 0.86 0.00
7_K 37_R 0.86 0.00
72_Q 39_I 0.86 0.00
42_V 124_G 0.85 0.00
59_K 123_T 0.85 0.00
36_E 5_T 0.84 0.00
163_S 88_Q 0.84 0.00
172_E 107_I 0.84 0.00
85_S 97_V 0.84 0.00
127_L 72_A 0.84 0.00
62_R 92_H 0.84 0.00
50_V 70_A 0.84 0.00
112_M 62_T 0.84 0.00
124_P 99_A 0.84 0.00
42_V 44_R 0.83 0.00
27_R 86_T 0.83 0.00
78_A 46_L 0.83 0.00
91_G 115_L 0.83 0.00
12_V 83_I 0.83 0.00
52_I 71_F 0.83 0.00
15_F 71_F 0.83 0.00
20_G 100_V 0.83 0.00
26_L 75_A 0.83 0.00
84_R 26_L 0.82 0.00
104_S 117_R 0.82 0.00
13_Q 26_L 0.81 0.00
25_S 29_A 0.81 0.00
157_R 59_A 0.81 0.00
137_N 47_A 0.81 0.00
104_S 35_L 0.81 0.00
35_M 22_V 0.81 0.00
26_L 32_G 0.81 0.00
123_R 118_L 0.80 0.00
174_D 41_L 0.80 0.00
108_V 88_Q 0.80 0.00
31_K 91_L 0.80 0.00
60_S 91_L 0.80 0.00
98_D 100_V 0.80 0.00
138_D 47_A 0.80 0.00
31_K 121_F 0.80 0.00
7_K 22_V 0.80 0.00
7_K 12_R 0.80 0.00
42_V 61_L 0.79 0.00
75_M 34_Y 0.79 0.00
133_M 18_K 0.79 0.00
73_M 105_S 0.79 0.00
12_V 91_L 0.79 0.00
12_V 124_G 0.79 0.00
65_F 6_E 0.79 0.00
149_E 62_T 0.79 0.00
93_I 126_R 0.79 0.00
43_M 22_V 0.79 0.00
72_Q 25_L 0.79 0.00
154_E 52_I 0.79 0.00
108_V 29_A 0.78 0.00
69_V 21_V 0.78 0.00
63_K 39_I 0.78 0.00
13_Q 69_V 0.78 0.00
37_D 23_V 0.78 0.00
7_K 110_G 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.5458 seconds.