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OPENSEQ.org

RL16 - RPOA
UniProt: P0ADY7 - P0A7Z4
Length: 465
Sequences: 591
Seq/Len: 1.28
I_Prob: 0.09

RL16 - 50S ribosomal protein L16
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL16
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
90_E 57_T 1.51 0.09
105_M 88_L 1.30 0.05
33_L 286_E 1.25 0.04
103_Y 68_Y 1.24 0.04
17_N 106_G 1.22 0.04
106_D 288_E 1.21 0.04
117_F 297_K 1.18 0.03
103_Y 190_A 1.17 0.03
78_L 232_V 1.17 0.03
6_R 272_A 1.16 0.03
131_V 246_K 1.12 0.03
88_N 211_I 1.12 0.03
38_R 314_L 1.11 0.03
25_D 228_L 1.11 0.03
43_A 180_V 1.10 0.03
130_F 122_E 1.08 0.03
32_G 203_I 1.07 0.02
62_K 143_R 1.06 0.02
70_D 196_T 1.04 0.02
74_T 140_I 1.02 0.02
35_A 169_G 1.02 0.02
14_K 287_V 1.01 0.02
13_H 100_L 0.99 0.02
26_V 136_E 0.98 0.02
126_I 81_I 0.98 0.02
7_T 185_Y 0.97 0.02
109_P 111_T 0.96 0.02
30_S 131_C 0.96 0.02
132_T 147_Q 0.96 0.02
90_E 39_L 0.95 0.02
43_A 202_V 0.95 0.02
6_R 123_I 0.95 0.02
31_F 105_S 0.94 0.02
44_R 39_L 0.94 0.02
67_V 136_E 0.94 0.02
66_R 290_L 0.94 0.01
21_A 318_L 0.94 0.01
105_M 105_S 0.93 0.01
25_D 252_I 0.93 0.01
105_M 139_S 0.92 0.01
100_K 22_T 0.92 0.01
82_M 106_G 0.92 0.01
80_V 132_H 0.91 0.01
133_K 36_G 0.91 0.01
102_L 318_L 0.90 0.01
109_P 160_H 0.90 0.01
21_A 187_V 0.90 0.01
109_P 62_D 0.90 0.01
127_K 204_E 0.89 0.01
103_Y 318_L 0.89 0.01
31_F 221_A 0.89 0.01
3_Q 132_H 0.88 0.01
96_I 313_S 0.88 0.01
8_K 61_I 0.88 0.01
26_V 295_L 0.87 0.01
35_A 18_Q 0.87 0.01
9_F 222_T 0.87 0.01
58_K 200_K 0.87 0.01
94_A 211_I 0.87 0.01
80_V 312_L 0.87 0.01
102_L 115_I 0.87 0.01
89_V 57_T 0.86 0.01
78_L 196_T 0.86 0.01
91_Y 280_D 0.86 0.01
101_V 285_T 0.86 0.01
103_Y 227_Q 0.86 0.01
78_L 139_S 0.85 0.01
40_R 184_A 0.85 0.01
63_I 190_A 0.85 0.01
82_M 91_R 0.85 0.01
15_G 231_F 0.85 0.01
34_K 154_P 0.85 0.01
129_T 263_T 0.85 0.01
109_P 137_N 0.85 0.01
101_V 12_R 0.85 0.01
73_I 280_D 0.85 0.01
89_V 47_L 0.85 0.01
112_L 108_G 0.84 0.01
36_V 15_D 0.84 0.01
96_I 115_I 0.83 0.01
96_I 124_V 0.83 0.01
36_V 229_E 0.83 0.01
31_F 94_G 0.83 0.01
126_I 248_E 0.83 0.01
16_R 71_K 0.83 0.01
76_K 151_G 0.83 0.01
130_F 146_V 0.83 0.01
6_R 136_E 0.82 0.01
133_K 204_E 0.82 0.01
78_L 131_C 0.82 0.01
75_E 171_L 0.82 0.01
100_K 31_L 0.82 0.01
109_P 247_P 0.82 0.01
131_V 182_R 0.82 0.01
7_T 24_A 0.82 0.01
41_L 317_R 0.82 0.01
105_M 18_Q 0.82 0.01
96_I 165_E 0.81 0.01
39_G 220_A 0.81 0.01
126_I 220_A 0.81 0.01
41_L 238_R 0.81 0.01
72_P 80_E 0.81 0.01
70_D 59_V 0.80 0.01
12_M 172_L 0.80 0.01
112_L 90_V 0.80 0.01
51_R 274_A 0.80 0.01
13_H 153_V 0.80 0.01
59_R 298_K 0.79 0.01
55_R 231_F 0.79 0.01
119_L 288_E 0.79 0.01
11_K 72_E 0.79 0.01
82_M 121_V 0.79 0.01
62_K 184_A 0.79 0.01
14_K 292_T 0.79 0.01
44_R 271_K 0.79 0.01
102_L 68_Y 0.79 0.01
94_A 266_S 0.78 0.01
102_L 81_I 0.78 0.01
14_K 272_A 0.78 0.01
70_D 157_T 0.78 0.01
42_T 70_T 0.78 0.01
80_V 184_A 0.78 0.01
111_E 246_K 0.78 0.01
18_R 232_V 0.78 0.01
11_K 93_Q 0.78 0.01
5_K 143_R 0.78 0.01
84_K 257_V 0.78 0.01
136_M 327_A 0.77 0.01
70_D 57_T 0.77 0.01
43_A 275_I 0.77 0.01
49_A 125_K 0.77 0.01
97_Q 69_S 0.77 0.01
84_K 225_A 0.77 0.01
78_L 197_D 0.77 0.01
77_P 49_S 0.77 0.01
28_F 18_Q 0.77 0.01
54_T 158_R 0.76 0.01
95_L 273_E 0.76 0.01
119_L 77_D 0.76 0.01
13_H 123_I 0.76 0.01
131_V 133_L 0.76 0.01
3_Q 114_D 0.76 0.01
84_K 156_S 0.76 0.01
70_D 80_E 0.76 0.01
39_G 196_T 0.76 0.01
128_T 177_Y 0.76 0.01
102_L 156_S 0.76 0.01
101_V 113_A 0.76 0.01
69_P 174_D 0.76 0.01
128_T 223_I 0.75 0.01
88_N 57_T 0.75 0.01
96_I 85_L 0.75 0.01
78_L 313_S 0.75 0.01
100_K 214_E 0.75 0.01
26_V 181_E 0.74 0.01
108_V 275_I 0.74 0.01
7_T 206_E 0.74 0.01
80_V 125_K 0.74 0.01
108_V 300_L 0.74 0.01
84_K 75_Q 0.74 0.01
62_K 132_H 0.74 0.01
121_A 220_A 0.74 0.01
101_V 96_D 0.74 0.01
26_V 138_A 0.74 0.01
80_V 129_V 0.74 0.01
131_V 121_V 0.74 0.01
91_Y 80_E 0.74 0.01
124_L 77_D 0.74 0.01
48_A 156_S 0.73 0.01
48_A 146_V 0.73 0.01
128_T 39_L 0.73 0.01
58_K 215_E 0.73 0.01
63_I 79_L 0.73 0.01
16_R 277_Y 0.73 0.01
21_A 181_E 0.73 0.01
62_K 237_V 0.73 0.01
92_W 107_I 0.73 0.01
17_N 295_L 0.73 0.01
56_A 103_N 0.73 0.01
28_F 15_D 0.73 0.01
100_K 78_I 0.73 0.01
74_T 116_T 0.73 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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