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OPENSEQ.org

DKSA - HPPK
UniProt: P0ABS1 - P26281
Length: 310
Sequences: 188
Seq/Len: 0.61
I_Prob: 0.00

DKSA - RNA polymerase-binding transcription factor DksA
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DKSA
HPPK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HPPK
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
104_K 130_F 1.49 0.00
109_E 46_L 1.32 0.00
134_L 50_D 1.25 0.00
115_E 62_E 1.25 0.00
30_E 94_T 1.25 0.00
116_S 117_Y 1.24 0.00
145_R 156_L 1.22 0.00
59_V 48_P 1.16 0.00
149_M 7_A 1.16 0.00
30_E 95_L 1.16 0.00
51_L 156_L 1.14 0.00
103_L 99_I 1.13 0.00
59_V 10_S 1.12 0.00
73_V 118_D 1.11 0.00
33_N 8_I 1.10 0.00
13_S 125_M 1.08 0.00
34_E 110_E 1.08 0.00
34_E 17_E 1.08 0.00
34_E 66_A 1.07 0.00
53_D 102_F 1.07 0.00
54_E 47_G 1.06 0.00
24_Q 139_P 1.06 0.00
134_L 110_E 1.06 0.00
65_E 91_G 1.04 0.00
111_F 118_D 1.03 0.00
88_N 159_W 1.03 0.00
96_I 88_E 1.03 0.00
94_K 8_I 1.02 0.00
37_L 32_S 1.01 0.00
2_Q 125_M 1.00 0.00
42_R 147_I 0.98 0.00
27_P 133_A 0.97 0.00
42_R 138_F 0.97 0.00
119_V 140_D 0.94 0.00
41_R 44_P 0.94 0.00
113_Y 40_F 0.93 0.00
41_R 24_K 0.92 0.00
106_V 43_T 0.92 0.00
104_K 59_V 0.92 0.00
5_Q 125_M 0.92 0.00
145_R 46_L 0.91 0.00
88_N 74_T 0.91 0.00
104_K 73_H 0.91 0.00
149_M 158_K 0.91 0.00
72_P 95_L 0.90 0.00
63_Q 151_R 0.90 0.00
115_E 32_S 0.90 0.00
27_P 146_Q 0.90 0.00
37_L 151_R 0.90 0.00
136_I 99_I 0.89 0.00
84_L 5_Y 0.88 0.00
103_L 155_K 0.88 0.00
54_E 91_G 0.88 0.00
113_Y 150_T 0.88 0.00
150_A 114_V 0.88 0.00
38_A 155_K 0.87 0.00
110_D 102_F 0.87 0.00
59_V 23_L 0.86 0.00
51_L 151_R 0.86 0.00
70_P 118_D 0.86 0.00
83_S 49_Q 0.86 0.00
48_R 92_P 0.86 0.00
6_N 118_D 0.86 0.00
110_D 53_D 0.86 0.00
28_G 60_A 0.85 0.00
84_L 111_R 0.85 0.00
116_S 77_I 0.85 0.00
104_K 37_V 0.84 0.00
73_V 86_K 0.84 0.00
36_Q 53_D 0.84 0.00
96_I 126_L 0.84 0.00
56_D 92_P 0.83 0.00
109_E 138_F 0.83 0.00
96_I 155_K 0.83 0.00
106_V 148_L 0.83 0.00
108_D 127_W 0.83 0.00
34_E 50_D 0.82 0.00
60_T 69_E 0.82 0.00
111_F 123_G 0.82 0.00
51_L 92_P 0.82 0.00
13_S 46_L 0.82 0.00
51_L 154_D 0.82 0.00
113_Y 154_D 0.81 0.00
73_V 153_F 0.80 0.00
145_R 118_D 0.80 0.00
31_Y 74_T 0.80 0.00
88_N 10_S 0.80 0.00
111_F 117_Y 0.79 0.00
145_R 55_L 0.79 0.00
134_L 103_G 0.79 0.00
33_N 14_S 0.79 0.00
38_A 36_T 0.78 0.00
73_V 46_L 0.78 0.00
4_G 125_M 0.78 0.00
27_P 8_I 0.77 0.00
33_N 31_E 0.77 0.00
34_E 39_S 0.77 0.00
21_E 33_H 0.77 0.00
77_A 67_P 0.77 0.00
106_V 156_L 0.77 0.00
19_G 82_G 0.77 0.00
108_D 121_N 0.77 0.00
41_R 5_Y 0.76 0.00
124_R 101_L 0.76 0.00
109_E 40_F 0.76 0.00
59_V 39_S 0.76 0.00
103_L 76_R 0.76 0.00
64_D 97_L 0.76 0.00
104_K 30_P 0.76 0.00
42_R 17_E 0.76 0.00
67_A 104_N 0.76 0.00
34_E 157_N 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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