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OPENSEQ.org

CCMD - CCME
UniProt: P0ABM5 - P69490
Length: 228
Sequences: 177
Seq/Len: 0.83
I_Prob: 0.04

CCMD - Heme exporter protein D
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CCMD
CCME - Cytochrome c-type biogenesis protein CcmE
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CCME
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
15_G 104_R 1.65 0.04
24_A 87_A 1.55 0.03
30_I 62_V 1.41 0.02
20_F 18_G 1.39 0.02
26_V 109_V 1.35 0.02
15_G 27_L 1.31 0.02
5_F 36_L 1.29 0.02
15_G 39_T 1.27 0.02
5_F 35_D 1.23 0.01
25_V 60_L 1.23 0.01
53_Q 43_I 1.22 0.01
44_R 20_A 1.21 0.01
45_A 84_I 1.19 0.01
33_V 145_A 1.18 0.01
5_F 60_L 1.17 0.01
27_M 125_E 1.15 0.01
17_Y 4_R 1.15 0.01
56_R 104_R 1.15 0.01
5_F 28_Y 1.12 0.01
35_L 28_Y 1.10 0.01
64_Q 121_I 1.10 0.01
18_A 87_A 1.09 0.01
60_L 114_E 1.09 0.01
31_P 65_M 1.09 0.01
26_V 119_N 1.09 0.01
8_W 135_T 1.08 0.01
5_F 30_L 1.06 0.01
12_F 141_K 1.06 0.01
16_G 93_V 1.05 0.01
10_E 38_Y 1.04 0.01
17_Y 62_V 1.02 0.01
33_V 81_T 1.00 0.01
39_S 28_Y 1.00 0.01
46_I 60_L 0.99 0.01
42_Q 94_S 0.99 0.01
60_L 60_L 0.99 0.01
17_Y 60_L 0.99 0.01
35_L 139_V 0.99 0.01
52_Q 14_A 0.98 0.01
39_S 74_D 0.98 0.01
20_F 21_L 0.98 0.01
28_T 28_Y 0.98 0.01
56_R 18_G 0.97 0.01
56_R 78_L 0.96 0.01
13_A 43_I 0.96 0.01
58_A 88_E 0.95 0.01
6_A 12_A 0.95 0.01
60_L 121_I 0.95 0.01
63_A 41_G 0.95 0.01
51_A 27_L 0.94 0.01
47_L 46_G 0.94 0.01
44_R 12_A 0.94 0.01
44_R 92_D 0.93 0.01
17_Y 35_D 0.93 0.01
27_M 33_N 0.93 0.01
44_R 115_L 0.93 0.01
37_V 120_H 0.92 0.01
59_R 4_R 0.92 0.01
10_E 1_M 0.92 0.01
33_V 15_V 0.90 0.01
11_F 107_Q 0.90 0.01
60_L 133_N 0.90 0.01
16_G 4_R 0.90 0.01
17_Y 55_E 0.89 0.01
20_F 98_I 0.88 0.00
16_G 57_G 0.88 0.00
12_F 32_S 0.87 0.00
25_V 62_V 0.86 0.00
51_A 139_V 0.86 0.00
4_A 135_T 0.86 0.00
8_W 21_L 0.86 0.00
2_T 139_V 0.86 0.00
63_A 60_L 0.86 0.00
20_F 72_Q 0.86 0.00
5_F 139_V 0.86 0.00
3_P 35_D 0.85 0.00
5_F 38_Y 0.85 0.00
41_M 42_E 0.85 0.00
17_Y 112_Q 0.85 0.00
58_A 77_S 0.84 0.00
51_A 19_L 0.84 0.00
60_L 81_T 0.84 0.00
15_G 1_M 0.84 0.00
49_G 72_Q 0.84 0.00
31_P 143_M 0.84 0.00
64_Q 20_A 0.84 0.00
27_M 20_A 0.84 0.00
56_R 107_Q 0.83 0.00
24_A 2_N 0.83 0.00
7_S 36_L 0.83 0.00
48_R 26_V 0.83 0.00
39_S 35_D 0.83 0.00
10_E 141_K 0.83 0.00
25_V 135_T 0.82 0.00
46_I 50_T 0.82 0.00
45_A 22_T 0.81 0.00
46_I 28_Y 0.81 0.00
18_A 62_V 0.80 0.00
29_V 10_W 0.79 0.00
54_R 42_E 0.79 0.00
55_A 19_L 0.79 0.00
15_G 112_Q 0.79 0.00
57_E 30_L 0.79 0.00
63_A 22_T 0.79 0.00
6_A 141_K 0.79 0.00
40_V 122_L 0.79 0.00
15_G 147_H 0.78 0.00
28_T 32_S 0.78 0.00
35_L 60_L 0.78 0.00
60_L 62_V 0.78 0.00
19_F 34_I 0.78 0.00
18_A 117_K 0.78 0.00
33_V 11_I 0.78 0.00
33_V 90_S 0.77 0.00
34_V 16_L 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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