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OPENSEQ.org
CYOA - CYOC
UniProt: P0ABJ1 - P0ABJ3
Length: 519
Sequences: 310
Seq/Len: 0.63
I_Prob: 0.02
CYOA - Ubiquinol oxidase subunit 2
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CYOA 		CYOC - Cytochrome o ubiquinol oxidase subunit 3
Paralog alert: 0.19 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: CYOC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1fftBG:CHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
181_S 189_V 1.70 0.02
235_V 190_V 1.51 0.01
104_A 2_A 1.49 0.01
207_S 179_C 1.37 0.01
198_N 41_S 1.35 0.01
129_I 75_L 1.31 0.01
40_Q 118_Y 1.23 0.01
239_K 88_I 1.19 0.01
40_Q 189_V 1.16 0.00
49_G 94_N 1.15 0.00
181_S 88_I 1.15 0.00
152_E 47_Y 1.15 0.00
251_F 101_W 1.15 0.00
54_V 115_M 1.14 0.00
26_N 97_Q 1.14 0.00
131_V 131_D 1.13 0.00
129_I 107_L 1.11 0.00
278_I 170_T 1.09 0.00
281_F 35_S 1.08 0.00
66_A 179_C 1.08 0.00
124_E 96_S 1.07 0.00
210_Y 42_I 1.07 0.00
159_T 110_A 1.06 0.00
168_N 35_S 1.05 0.00
132_V 148_L 1.05 0.00
117_S 177_I 1.05 0.00
239_K 46_T 1.04 0.00
148_A 36_D 1.04 0.00
268_N 96_S 1.04 0.00
180_G 72_E 1.04 0.00
50_L 202_G 1.04 0.00
203_Y 88_I 1.03 0.00
175_F 129_G 1.02 0.00
59_I 60_G 1.02 0.00
187_A 182_L 1.01 0.00
127_I 78_F 1.00 0.00
197_A 72_E 1.00 0.00
104_A 82_T 0.98 0.00
52_L 196_T 0.98 0.00
167_S 46_T 0.98 0.00
215_F 105_T 0.97 0.00
56_I 56_G 0.97 0.00
164_K 197_V 0.96 0.00
86_N 37_C 0.96 0.00
164_K 94_N 0.96 0.00
216_S 85_M 0.96 0.00
195_L 72_E 0.96 0.00
83_S 137_S 0.95 0.00
64_G 117_I 0.95 0.00
172_N 101_W 0.95 0.00
29_L 46_T 0.95 0.00
183_I 110_A 0.94 0.00
207_S 175_T 0.94 0.00
98_L 70_L 0.94 0.00
108_W 34_M 0.94 0.00
115_E 132_R 0.94 0.00
84_H 194_V 0.93 0.00
208_A 162_V 0.92 0.00
53_I 25_K 0.92 0.00
159_T 46_T 0.92 0.00
60_L 196_T 0.92 0.00
167_S 27_F 0.92 0.00
125_K 154_L 0.92 0.00
90_A 196_T 0.91 0.00
93_W 36_D 0.91 0.00
261_N 160_L 0.91 0.00
209_S 157_M 0.91 0.00
280_K 192_I 0.91 0.00
257_P 140_F 0.91 0.00
84_H 32_Y 0.90 0.00
54_V 190_V 0.90 0.00
239_K 201_M 0.90 0.00
36_I 190_V 0.90 0.00
66_A 83_Y 0.90 0.00
68_K 94_N 0.90 0.00
197_A 106_W 0.89 0.00
208_A 141_A 0.89 0.00
218_M 175_T 0.89 0.00
19_T 138_A 0.89 0.00
106_L 103_A 0.89 0.00
251_F 25_K 0.88 0.00
159_T 155_I 0.88 0.00
100_I 124_I 0.88 0.00
93_W 34_M 0.88 0.00
215_F 101_W 0.88 0.00
86_N 131_D 0.87 0.00
33_K 20_D 0.87 0.00
82_W 36_D 0.87 0.00
280_K 60_G 0.87 0.00
112_H 130_P 0.86 0.00
198_N 24_T 0.86 0.00
50_L 168_G 0.86 0.00
277_V 1_M 0.86 0.00
274_F 190_V 0.86 0.00
91_V 129_G 0.86 0.00
132_V 130_P 0.86 0.00
120_L 24_T 0.86 0.00
280_K 197_V 0.86 0.00
18_G 113_I 0.85 0.00
217_G 190_V 0.85 0.00
10_L 144_G 0.85 0.00
183_I 111_G 0.85 0.00
183_I 36_D 0.85 0.00
151_N 119_E 0.85 0.00
129_I 98_V 0.84 0.00
111_T 143_V 0.84 0.00
35_Q 175_T 0.84 0.00
208_A 177_I 0.84 0.00
147_I 121_H 0.84 0.00
219_K 61_K 0.83 0.00
100_I 173_N 0.83 0.00
104_A 86_A 0.83 0.00
165_V 164_I 0.83 0.00
31_D 167_R 0.82 0.00
221_K 190_V 0.82 0.00
55_V 70_L 0.82 0.00
263_V 85_M 0.82 0.00
47_A 91_Y 0.82 0.00
82_W 134_G 0.82 0.00
167_S 38_I 0.82 0.00
13_L 7_T 0.82 0.00
88_V 129_G 0.82 0.00
127_I 125_V 0.82 0.00
21_L 154_L 0.81 0.00
79_S 92_K 0.81 0.00
266_F 103_A 0.81 0.00
101_I 104_L 0.81 0.00
167_S 189_V 0.81 0.00
19_T 171_S 0.81 0.00
91_V 169_L 0.81 0.00
164_K 71_V 0.81 0.00
115_E 177_I 0.81 0.00
161_V 196_T 0.81 0.00
204_D 128_M 0.81 0.00
30_L 65_E 0.80 0.00
257_P 169_L 0.80 0.00
167_S 175_T 0.80 0.00
28_A 54_T 0.80 0.00
200_P 14_H 0.80 0.00
74_K 141_A 0.80 0.00
55_V 53_G 0.80 0.00
227_D 93_N 0.80 0.00
187_A 26_I 0.80 0.00
118_K 25_K 0.80 0.00
57_P 36_D 0.79 0.00
67_W 136_L 0.79 0.00
52_L 140_F 0.79 0.00
86_N 5_T 0.79 0.00
190_Q 38_I 0.79 0.00
170_V 132_R 0.79 0.00
43_L 139_F 0.79 0.00
218_M 179_C 0.79 0.00
30_L 196_T 0.79 0.00
131_V 81_I 0.79 0.00
121_A 75_L 0.79 0.00
125_K 181_S 0.79 0.00
245_M 88_I 0.79 0.00
266_F 178_M 0.79 0.00
59_I 59_T 0.79 0.00
149_T 182_L 0.78 0.00
130_E 141_A 0.78 0.00
14_S 95_K 0.78 0.00
203_Y 108_F 0.78 0.00
105_V 108_F 0.78 0.00
35_Q 197_V 0.78 0.00
23_S 148_L 0.78 0.00
181_S 86_A 0.78 0.00
157_A 190_V 0.78 0.00
215_F 82_T 0.78 0.00
49_G 2_A 0.78 0.00
28_A 145_T 0.78 0.00
54_V 106_W 0.78 0.00
100_I 115_M 0.78 0.00
65_F 195_F 0.78 0.00
185_A 66_L 0.78 0.00
135_D 98_V 0.77 0.00
218_M 37_C 0.77 0.00
194_H 180_L 0.77 0.00
161_V 16_H 0.77 0.00
54_V 72_E 0.77 0.00
170_V 130_P 0.77 0.00
233_Q 100_S 0.77 0.00
73_N 179_C 0.77 0.00
165_V 104_L 0.77 0.00
100_I 160_L 0.77 0.00
243_N 47_Y 0.76 0.00
137_K 169_L 0.76 0.00
36_I 92_K 0.76 0.00
227_D 138_A 0.76 0.00
239_K 35_S 0.76 0.00
129_I 83_Y 0.76 0.00
182_Q 67_P 0.76 0.00
28_A 47_Y 0.76 0.00
97_I 47_Y 0.76 0.00
141_I 36_D 0.76 0.00
175_F 179_C 0.76 0.00
183_I 53_G 0.76 0.00
269_V 96_S 0.76 0.00
59_I 115_M 0.76 0.00
123_D 94_N 0.76 0.00
130_E 88_I 0.75 0.00
39_E 157_M 0.75 0.00
47_A 197_V 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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